PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66652.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 363aa MW: 40835.6 Da PI: 7.9812

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	98	143	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+ ++ gR++k+c++rw++ PKA66652.1 98 RGHWRPAEDSKLKELVAVYGPQNWNLIAENLN-GRSGKSCRLRWFNQ 143 899***************************.*********996 PP
2	Myb_DNA-binding	56.3	7.1e-18	150	193	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PKA66652.1 150 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 193 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MALEGCSGAT DHSMASRCIQ TQEESRFPSF STAKPIFYQM GSLPTDPPSS PSRHHFFHFV 60 GSSQTSEETG EKRTIPASEE EISVDGGEST AHSKLCTRGH WRPAEDSKLK ELVAVYGPQN 120 WNLIAENLNG RSGKSCRLRW FNQLDPRINR SAFTEEEEEK LMAAHRLYGN KWAMIARLFP 180 GRTDNAVKNH WHVIMARKYR EQSTAYRRRK LSQAMNRKLE DHTAAISHPL SFSSFPRPMA 240 DNGSNSSSAR FEISPKPKAF DFIPGPWEKE KAKMAGSWKT WDEQITVHHE GFHGYNYYRQ 300 AAILLAMQEA GGYRRCQTST ASSSSGEVAT MISIAEMEVD RLNDEPINSS SPSFIDFLGV 360 GTT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MALEGCSGAT DHSMASRCIQ TQEESRFPSF STAKPIFYQM GSLPTDPPSS PSRHHFFHFV  60
GSSQTSEETG EKRTIPASEE EISVDGGEST AHSKLCTRGH WRPAEDSKLK ELVAVYGPQN  120
WNLIAENLNG RSGKSCRLRW FNQLDPRINR SAFTEEEEEK LMAAHRLYGN KWAMIARLFP  180
GRTDNAVKNH WHVIMARKYR EQSTAYRRRK LSQAMNRKLE DHTAAISHPL SFSSFPRPMA  240
DNGSNSSSAR FEISPKPKAF DFIPGPWEKE KAKMAGSWKT WDEQITVHHE GFHGYNYYRQ  300
AAILLAMQEA GGYRRCQTST ASSSSGEVAT MISIAEMEVD RLNDEPINSS SPSFIDFLGV  360
GTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-77	MYB family protein