PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66627.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 412aa MW: 45008.9 Da PI: 5.6863

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.5	4.4e-10	226	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ k++g+++A+++d ++ g ++ k+ g+++++e+Aa+a++ a +k++g PKA66627.1 226 SCYHGVTKLKWSGKYEAHLWDNTSrvEGsrRKgKHGIFGSYDSEEKAARAHDLAVLKYWG 285 79*****************65558667633688888******************98 PP
2	AP2	51	3.7e-16	330	383	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I + g r k ++lg+f t+eeAa+a++ a+ +l+g PKA66627.1 330 SSYRGVTRRK-DGKWQARIGRV---GeSRdvKDIYLGTFETEEEAAEAYDIAAIELRG 383 67***999.9***998...553458***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MRKLRDSLDT PDSGDHFENR KLRLPSLNDQ AAGGCQKGAA YIQGFGCVEG ETSLLHTAGV 60 SSAFDPVNWA KLDSIEPETT GGDHLPTALG YGTTALVASG KRETLEGDNG LPDGLNDISS 120 LMGARKVVDA PQDYGGLPEK TVYGQRFTGQ EASEDSVMKA EADSFEGPSG ANQESRFTER 180 SAGYETCSME DTANGSVPLE VAKCGEKRVG GLLAAAMKKY TVPRSSCYHG VTKLKWSGKY 240 EAHLWDNTSR VEGSRRKGKH GIFGSYDSEE KAARAHDLAV LKYWGPSQIS KLNFPVSEYE 300 HELETMKTMT QDEYVAHVRR QSSCFSRGAS SYRGVTRRKD GKWQARIGRV GESRDVKDIY 360 LGTFETEEEA AEAYDIAAIE LRGVHAVTNF DISNYCEGSF KRIEGAPCKL ET

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MRKLRDSLDT PDSGDHFENR KLRLPSLNDQ AAGGCQKGAA YIQGFGCVEG ETSLLHTAGV  60
SSAFDPVNWA KLDSIEPETT GGDHLPTALG YGTTALVASG KRETLEGDNG LPDGLNDISS  120
LMGARKVVDA PQDYGGLPEK TVYGQRFTGQ EASEDSVMKA EADSFEGPSG ANQESRFTER  180
SAGYETCSME DTANGSVPLE VAKCGEKRVG GLLAAAMKKY TVPRSSCYHG VTKLKWSGKY  240
EAHLWDNTSR VEGSRRKGKH GIFGSYDSEE KAARAHDLAV LKYWGPSQIS KLNFPVSEYE  300
HELETMKTMT QDEYVAHVRR QSSCFSRGAS SYRGVTRRKD GKWQARIGRV GESRDVKDIY  360
LGTFETEEEA AEAYDIAAIE LRGVHAVTNF DISNYCEGSF KRIEGAPCKL ET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-60	AP2 family protein