PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66058.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 734aa MW: 83071.4 Da PI: 7.2268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.5e-24	106	194	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF r+ +s++sk ++ ++++fvCskeg +++ +++ +++r+r + r gCka+++v ++ ++w+v+kle+ HnH+l PKA66058.1 106 SFYNDYARRLGFPFRVGRSRRSKGvEEVLIMKRFVCSKEGIYRKKASSEGTRKRERISMREGCKAMMEVIRD-GERWVVSKLEKAHNHHL 194 5*******************761556799**********99999***************999.9************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MNGCSSSIAS LMSGRFMEGS RTEGDELIAD YVSCLMSLDA NTNTRPGENI NPSSLSISVP 60 PDVPVSIASR LPESLEIKDS VHNGVEETKL EPVLGLEFES DEAAKSFYND YARRLGFPFR 120 VGRSRRSKGV EEVLIMKRFV CSKEGIYRKK ASSEGTRKRE RISMREGCKA MMEVIRDGER 180 WVVSKLEKAH NHHLGTCSRV GYLRARGFIE TSQKSSIMAS DNTTVLRQNA FGEGGDAQGL 240 FDYFKRMQAE NPSFFYAIHV DNNSCVTNAF WADSRARTAY SYFGDAVTFD TTYKKNKYMM 300 PFVMFSGVNH HLQPILFGSA LLVDETEYSF IWLFETWLAA MGGRPPVSLV TDQNRAMGAA 360 IAKVFPSTSH RFCKWLILSR SKQKLAHIYS AYPTVREELE KCVIESESVR TFETNWASMI 420 DKYDLRKNTW LQGLFNVRQK WVPVYLKDFF FAEMSPTQKL ETMNDFYKKY FNTKTSFKVL 480 LTQFDLAMAG RYEDEVQADI DTLCMKPDLK TASPIEKQAA AVYTRAVFEK FQEEFVESLG 540 YNVYKVKDGS ISKFSVARDD DAYETFTVTY NAVKSIASCS CKHFEFSGIL CRHVLGVFLM 600 VDIRLLPEDY FLRRWMKNAK GGAFLDERGA DIQVLSLDSF ASRFSDLCRD AVRCADKGAT 660 SAEIYKAAKD ALQKAIAEII SSEKNASRGA QRDAININEE ITIDDAINDQ SLQDPERKVT 720 NFLGQLLGSS WSPM

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MNGCSSSIAS LMSGRFMEGS RTEGDELIAD YVSCLMSLDA NTNTRPGENI NPSSLSISVP  60
PDVPVSIASR LPESLEIKDS VHNGVEETKL EPVLGLEFES DEAAKSFYND YARRLGFPFR  120
VGRSRRSKGV EEVLIMKRFV CSKEGIYRKK ASSEGTRKRE RISMREGCKA MMEVIRDGER  180
WVVSKLEKAH NHHLGTCSRV GYLRARGFIE TSQKSSIMAS DNTTVLRQNA FGEGGDAQGL  240
FDYFKRMQAE NPSFFYAIHV DNNSCVTNAF WADSRARTAY SYFGDAVTFD TTYKKNKYMM  300
PFVMFSGVNH HLQPILFGSA LLVDETEYSF IWLFETWLAA MGGRPPVSLV TDQNRAMGAA  360
IAKVFPSTSH RFCKWLILSR SKQKLAHIYS AYPTVREELE KCVIESESVR TFETNWASMI  420
DKYDLRKNTW LQGLFNVRQK WVPVYLKDFF FAEMSPTQKL ETMNDFYKKY FNTKTSFKVL  480
LTQFDLAMAG RYEDEVQADI DTLCMKPDLK TASPIEKQAA AVYTRAVFEK FQEEFVESLG  540
YNVYKVKDGS ISKFSVARDD DAYETFTVTY NAVKSIASCS CKHFEFSGIL CRHVLGVFLM  600
VDIRLLPEDY FLRRWMKNAK GGAFLDERGA DIQVLSLDSF ASRFSDLCRD AVRCADKGAT  660
SAEIYKAAKD ALQKAIAEII SSEKNASRGA QRDAININEE ITIDDAINDQ SLQDPERKVT  720
NFLGQLLGSS WSPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-164	FAR1 family protein