PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65978.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 269aa    MW: 30146 Da    PI: 9.5941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.65.6e-1785133149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                 k+ien+  r+v+fskRr g++ KA  L +LC++e a++++s  g+ y +
  PKA65978.1  85 KKIENEDARHVSFSKRRCGLFTKACDLATLCGVELAIVVYSAAGNPYSF 133
                 68*****************************************998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MQFTNGNNYI STQKSPKIKP TNRMHLIPLD FPLYRSSPSI KEEPPSLLLI FLLLLLLLLL  60
LMSAINVIAR RKRKASSGRR KIEIKKIENE DARHVSFSKR RCGLFTKACD LATLCGVELA  120
IVVYSAAGNP YSFGSPTVDS VVDRFLAGRP DRVEPGRMNQ AGLVQVLNQQ CMDLAAQIRA  180
AEERRSSLEL RIRAAGESNL LSQLTNDEED ASPMQLEKLK KLLLDLRRKV DYRFADLLSG  240
KEAIEFNSNL TSSQLVELDV VGGWPGYEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-21M-type_MADS family protein