PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65030.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 515aa MW: 58385.8 Da PI: 9.8562

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.6	1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ PKA65030.1 9 KRIESTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP
2	K-box	82.7	8e-28	58	125	33	100
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++Rhl+G++L+sLs+keL+qLe++Le+++++iRskK+e+l+++ie++qk+e elq en++Lr+k++e PKA65030.1 58 SNNRHLMGDSLSSLSIKELKQLESRLERGITRIRSKKHEMLFAEIEYMQKRETELQTENMYLRTKMAE 125 578**************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MGRGKIEIKR IESTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 RHLMGDSLSS LSIKELKQLE SRLERGITRI RSKKHEMLFA EIEYMQKRET ELQTENMYLR 120 TKMAENERAQ EANIVANAAA LGTLPTFDSR NYYHVNMLEA EASYPHTKHK KVAGGSRALP 180 RLHPTCRHLR SAPAATSLSF RSLFIQFLGS IFIEKGEVGG GMDERIPPGA YFQYQSALQL 240 PHQSVRPPSA SFDKERYLAE LLAERQKLVP FVQVVPFCSR LLNQEILRVS SYVPNQNFAD 300 HERFEQSSPF RLAGHSSNGG PVKLEGWSAM QTEENRYFPR IGTIQAHPVA WNGVPGVTSI 360 PVLKKVVRLD VPVDKYPSYN FVGRLLGPRG NSLKRVEATT HCRVYIRGRG SVKDSIKEEK 420 LRDKPGYEHL NEPLHVLVEA EFPADVIDGQ LNKTVEILEG LLKPVEDESM DMYKKQQLRE 480 LAMLNGTLRE DSPYNMSPSA SPFSSNGMKR AKTGR

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MGRGKIEIKR IESTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
RHLMGDSLSS LSIKELKQLE SRLERGITRI RSKKHEMLFA EIEYMQKRET ELQTENMYLR  120
TKMAENERAQ EANIVANAAA LGTLPTFDSR NYYHVNMLEA EASYPHTKHK KVAGGSRALP  180
RLHPTCRHLR SAPAATSLSF RSLFIQFLGS IFIEKGEVGG GMDERIPPGA YFQYQSALQL  240
PHQSVRPPSA SFDKERYLAE LLAERQKLVP FVQVVPFCSR LLNQEILRVS SYVPNQNFAD  300
HERFEQSSPF RLAGHSSNGG PVKLEGWSAM QTEENRYFPR IGTIQAHPVA WNGVPGVTSI  360
PVLKKVVRLD VPVDKYPSYN FVGRLLGPRG NSLKRVEATT HCRVYIRGRG SVKDSIKEEK  420
LRDKPGYEHL NEPLHVLVEA EFPADVIDGQ LNKTVEILEG LLKPVEDESM DMYKKQQLRE  480
LAMLNGTLRE DSPYNMSPSA SPFSSNGMKR AKTGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	5e-63	MIKC_MADS family protein