PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64881.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 543aa MW: 60843 Da PI: 5.3799

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.7e-21	16	71	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe+lF+ +++p++++r +L+ lgL+ rq+k+WFqNrR+++k PKA64881.1 16 KKRYHRHTPRQIQELEALFKVCPHPDEKQRMQLSLDLGLEPRQIKFWFQNRRTQMK 71 688999***********************************************998 PP
2	START	84.4	2.5e-27	268	370	90	206
EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHH CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvk 186 + +m++e+ lsp+vp R+f f+Ry++q +++ wvi dvSvd lpSg li++++ng+sk++wve ++ +++ + h+l++ lv PKA64881.1 268 SVRYMYSEFLGLSPVVPsREFCFLRYCQQIEQDLWVITDVSVD----------------LPSGSLIQDMPNGYSKIVWVELMEIEEKNVtHQLYHDLVD 350 689**********************************9997................68999******************9999***** PP HHHHHHHHHHHHHTXXXXXX CS START 187 sglaegaktwvatlqrqcek 206 sg+a+ga++wvatlqr ce+ PKA64881.1 351 SGIAFGAQRWVATLQRMCER 370 ****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MDSSDEQDVS DSQRKKKRYH RHTPRQIQEL EALFKVCPHP DEKQRMQLSL DLGLEPRQIK 60 FWFQNRRTQM KAQHERADNC SLRAENDKIR CENIAMREAL KNVICPSCGS PQASEDSYFD 120 EQKLRMENAR LKDELDRVST ITSKYLGRPV TQLPPIQTLS GSSLDLTVGS YGSTGFTPSA 180 ISETEKQMMI ELATQAMEEL IRLAQTDEPL WTRFGSEGRE MLNLETYEKI FSRPVHQFRS 240 PDTRIETSRD SGDVMMSSLH LVDMFMNSVR YMYSEFLGLS PVVPSREFCF LRYCQQIEQD 300 LWVITDVSVD LPSGSLIQDM PNGYSKIVWV ELMEIEEKNV THQLYHDLVD SGIAFGAQRW 360 VATLQRMCER IACLTVTGDS PRDQWDVLSN GKAVREVTRI ANGQHPGNCI SLFRVNPSNP 420 NESNMLILQE SCTDPSGSLI VYVSIDPTSI NIAMSGEDPS FIPLLPSGFV VLPDGRPSFG 480 SHASSSSNPM GGSSGSVLTI AFQIMVSSLP SAKLNLESVA TVNHLIGATV QHIKAALSSL 540 GTK

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MDSSDEQDVS DSQRKKKRYH RHTPRQIQEL EALFKVCPHP DEKQRMQLSL DLGLEPRQIK  60
FWFQNRRTQM KAQHERADNC SLRAENDKIR CENIAMREAL KNVICPSCGS PQASEDSYFD  120
EQKLRMENAR LKDELDRVST ITSKYLGRPV TQLPPIQTLS GSSLDLTVGS YGSTGFTPSA  180
ISETEKQMMI ELATQAMEEL IRLAQTDEPL WTRFGSEGRE MLNLETYEKI FSRPVHQFRS  240
PDTRIETSRD SGDVMMSSLH LVDMFMNSVR YMYSEFLGLS PVVPSREFCF LRYCQQIEQD  300
LWVITDVSVD LPSGSLIQDM PNGYSKIVWV ELMEIEEKNV THQLYHDLVD SGIAFGAQRW  360
VATLQRMCER IACLTVTGDS PRDQWDVLSN GKAVREVTRI ANGQHPGNCI SLFRVNPSNP  420
NESNMLILQE SCTDPSGSLI VYVSIDPTSI NIAMSGEDPS FIPLLPSGFV VLPDGRPSFG  480
SHASSSSNPM GGSSGSVLTI AFQIMVSSLP SAKLNLESVA TVNHLIGATV QHIKAALSSL  540
GTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-157	HD-ZIP family protein