PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64871.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GeBP

Protein Properties

Length: 386aa MW: 43037.6 Da PI: 9.4201

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	80.3	3e-25	96	190	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+wse+Dei +LqGl+ + ++g d++ fy+ + +s+ +++sql+eK+rrL+kK++ + ++++g++ s ++hd++ ++l+ ++W+ PKA64871.1 96 KFHRIWSESDEIRFLQGLLGC-WSQGLVFPRDLNMFYDRFTESMPQPYTRSQLSEKLRRLRKKYRVMAGRVERGHNASRLSQHDRDLLHLCTRLWD 190 699****************.677988888**************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MATSTPLNIK SAARKLPIKR RTPAQSLLQP QPLSSPNIPT PHPNPNPNPN PKPNPNHTVL 60 SDPPAYSSFD DDPDAENDEE ADADGGRGGT KQPPFKFHRI WSESDEIRFL QGLLGCWSQG 120 LVFPRDLNMF YDRFTESMPQ PYTRSQLSEK LRRLRKKYRV MAGRVERGHN ASRLSQHDRD 180 LLHLCTRLWD PSYSSTSPFP AHEAAATTIS AGNKRRRPNP RPSGRTRASS SVPQPASVEL 240 VPHLPSDLAQ AVPARAPSAE DVKGHLELLP TPPIEESGFV DVTTSCLPRV EPNQVEAAPK 300 TLNKSVDTKV ERTSLLPLKM VLNVFDSALN EMRSTLACQG FTSPDNALSF GSQMNDLSKK 360 WQEQRIAEFD VLARRWRLVI EQATQI

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MATSTPLNIK SAARKLPIKR RTPAQSLLQP QPLSSPNIPT PHPNPNPNPN PKPNPNHTVL  60
SDPPAYSSFD DDPDAENDEE ADADGGRGGT KQPPFKFHRI WSESDEIRFL QGLLGCWSQG  120
LVFPRDLNMF YDRFTESMPQ PYTRSQLSEK LRRLRKKYRV MAGRVERGHN ASRLSQHDRD  180
LLHLCTRLWD PSYSSTSPFP AHEAAATTIS AGNKRRRPNP RPSGRTRASS SVPQPASVEL  240
VPHLPSDLAQ AVPARAPSAE DVKGHLELLP TPPIEESGFV DVTTSCLPRV EPNQVEAAPK  300
TLNKSVDTKV ERTSLLPLKM VLNVFDSALN EMRSTLACQG FTSPDNALSF GSQMNDLSKK  360
WQEQRIAEFD VLARRWRLVI EQATQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	222	RRRPNPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	3e-13	GeBP family protein