PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64371.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 33512.5 Da PI: 7.3975

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.9e-17	149	203	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PKA64371.1 149 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLLLAKQLNLRPRQVEVWFQNRRARTK 203 778899***********************************************98 PP
2	HD-ZIP_I/II	124.7	4.3e-40	149	238	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l PKA64371.1 149 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLLLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLREENRRLQKELAELR-AL 238 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MPAEMELALS LGDPSTKMSG VGGTAGSAAG GMRPSIGLKI GFCVGIQSGE EEEDDGGGRE 60 RSRGFPWAAQ NKNLEISTAA VFDVNEAPSQ EEAEEGATTS SPNSAASCFN NTEFTDGGRG 120 SAAAAPAFTE PDRSLTWRAS DEEENGGARK KLRLSKDQSA FLEESFKEHN TLNPKQKLLL 180 AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LREENRRLQK ELAELRALKA 240 SPPFFMQLPA TTLSMCPACE RVSSNSGSAG TSHPQPAMEK NRTLFPKPRI FPFARSPPAA 300 VHHHSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	206	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	5e-60	HD-ZIP family protein