PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63077.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 592aa MW: 65023.5 Da PI: 6.7784

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.8e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l d v+++G g+W+++ ++ g+ R++k+c++rw ++l PKA63077.1 42 KGPWTSEEDEILMDHVRKYGQGNWNSVQKYSGLARCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	47.1	5.5e-15	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+ ++ +++ +G++ W++ a++++ gRt++++k++w++ PKA63077.1 95 KLPFTPEEERKIMELHSVMGNK-WARMASHLP-GRTDNEIKNYWNT 138 689*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MNPDKSKGNK VVSPKSQPCS PSNDEGSSGI SSKVEGRTDS KKGPWTSEED EILMDHVRKY 60 GQGNWNSVQK YSGLARCGKS CRLRWANHLR PNLKKLPFTP EEERKIMELH SVMGNKWARM 120 ASHLPGRTDN EIKNYWNTRI KRQQRAGLPL YPPDLCLQVV DVNQLMNGQF SCGEKRNDKT 180 LSGGKYEKLT NGFKSFMASR QQLSYASSVD IPCSMRKSWG FEPQACSTSG QGGNSAKRSK 240 ICEAVFPGCH GNVTYVVPTY DQFQIQHPRM VFWNSKVGYP FEPSADSKNL LSSRCLKPGS 300 NALSNSYFSA SSHLPGTEKM ELPSLQYPGI DFHNLLAGHN GLYYTLDGNI QSSGPPSDFT 360 GKSDCTLPHS SGLLEDLVYQ SQGIGNTYKE SSEKSSVSSA ITPGDMLESS KLNILNVDLE 420 GRSVPSSPFG LSGDSLLDDS SSVFRRHEYY EYHELPPFKA SLRGQVATPS TEQVSTSKLQ 480 DKVASIMFES VRPDVFLGEG CVDRSQDAKE NSHMGDAIVS LLAQDPAPSS AFSADSCAWN 540 NMPQDVKETS DVDDVVAALP VQDPAPSSTF SLDSCPWSNM PSVNHISDGK HD

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MNPDKSKGNK VVSPKSQPCS PSNDEGSSGI SSKVEGRTDS KKGPWTSEED EILMDHVRKY  60
GQGNWNSVQK YSGLARCGKS CRLRWANHLR PNLKKLPFTP EEERKIMELH SVMGNKWARM  120
ASHLPGRTDN EIKNYWNTRI KRQQRAGLPL YPPDLCLQVV DVNQLMNGQF SCGEKRNDKT  180
LSGGKYEKLT NGFKSFMASR QQLSYASSVD IPCSMRKSWG FEPQACSTSG QGGNSAKRSK  240
ICEAVFPGCH GNVTYVVPTY DQFQIQHPRM VFWNSKVGYP FEPSADSKNL LSSRCLKPGS  300
NALSNSYFSA SSHLPGTEKM ELPSLQYPGI DFHNLLAGHN GLYYTLDGNI QSSGPPSDFT  360
GKSDCTLPHS SGLLEDLVYQ SQGIGNTYKE SSEKSSVSSA ITPGDMLESS KLNILNVDLE  420
GRSVPSSPFG LSGDSLLDDS SSVFRRHEYY EYHELPPFKA SLRGQVATPS TEQVSTSKLQ  480
DKVASIMFES VRPDVFLGEG CVDRSQDAKE NSHMGDAIVS LLAQDPAPSS AFSADSCAWN  540
NMPQDVKETS DVDDVVAALP VQDPAPSSTF SLDSCPWSNM PSVNHISDGK HD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	2e-72	MYB family protein