PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63037.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GeBP

Protein Properties

Length: 344aa MW: 37822.5 Da PI: 7.0385

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	104	1.2e-32	87	184	2	96
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +fq+lw++ Dei +L G++df++++g+ +++d+ f++ ++ +++f+++k+q++eK+rrLKkK+++ ++++sg+ +f+++hd+ ++e+s++iW PKA63037.1 87 MFQKLWTDADEIRVLEGFLDFTTRRGTthaTYQHDTGPFFDEIRPRLQFDFNKNQIMEKLRRLKKKYRNAAARIDSGRGSVFKNPHDRAAYEISRQIW 184 79**********************98844555************************************************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MRPSSIWPQS GDQNLTLNPN PTLRTKSQIP SPNHRTTTMP PAGDDDPAVS DEATDSDDFA 60 VGDQKRRRIS DAAAGGGGGG GEESRRMFQK LWTDADEIRV LEGFLDFTTR RGTTHATYQH 120 DTGPFFDEIR PRLQFDFNKN QIMEKLRRLK KKYRNAAARI DSGRGSVFKN PHDRAAYEIS 180 RQIWCSTFMR KPKNSPCSGA VEIEEAPTDR SGGGGVAVPV SDLARVTVAV VEGNSAPVSS 240 SSVPPPLPAP LASGSDPSVE EEAVRICLAP LFKELLQSAI GGSAATMAAW PLWVLPPHPP 300 PADAEGDERW RRQRILELEV YLKRIELVEE CVRSVLDNLR SKRA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MRPSSIWPQS GDQNLTLNPN PTLRTKSQIP SPNHRTTTMP PAGDDDPAVS DEATDSDDFA  60
VGDQKRRRIS DAAAGGGGGG GEESRRMFQK LWTDADEIRV LEGFLDFTTR RGTTHATYQH  120
DTGPFFDEIR PRLQFDFNKN QIMEKLRRLK KKYRNAAARI DSGRGSVFKN PHDRAAYEIS  180
RQIWCSTFMR KPKNSPCSGA VEIEEAPTDR SGGGGVAVPV SDLARVTVAV VEGNSAPVSS  240
SSVPPPLPAP LASGSDPSVE EEAVRICLAP LFKELLQSAI GGSAATMAAW PLWVLPPHPP  300
PADAEGDERW RRQRILELEV YLKRIELVEE CVRSVLDNLR SKRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	69	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-38	GeBP family protein