PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA63029.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46859.3 Da    PI: 6.4167
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA63029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-2271115145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                 kr en+s rqvt+skRr+gilKKA+ELS+LCd+++++++fs+t k
  PKA63029.1  71 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDILLLMFSPTEK 115
                 689***************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MKTMDLAKSD GFKINSVKFL TCDSFQCVVF FLRSTSWWIF SVKSSVPQFP VLHFCPEIHC  60
IHMGRVKLKI KRLENTSGRQ VTYSKRRAGI LKKAKELSIL CDIDILLLMF SPTEKPTLCL  120
GERSNIDDII TKFAQLTPQE RAKRELESLE ALKKTFKKLD HDVNIQDFLG SSQTVEDLTN  180
HSRALQAQIS EVERKLSCWT DPEKVNSIDQ VRQMEETLRE SLNRIQMQKE YLGKQLVSLD  240
CSGQFPNGLN LPMALNNDIQ SSHMQWFYDN NGQNLMLLQD SSFLHQRNRE CSTDTMLQGY  300
PGFFSTEKQA GYCKNGTDES LNELSQNSCL QLQLGAQYPY QPYGLNMLGE KKFGPDGEVS  360
LQEDHIHLQV NGFEQPKPGY DAGTQNWASI SCSCGVGMFD DQLCPQQQNQ T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-79M-type_MADS family protein