PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62774.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 409aa MW: 44224.2 Da PI: 9.1712

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PKA62774.1 63 YVCEICNQGFQRDQNLQMHRRRH 85 9*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MFKISPSPPR QDPLTAPSPA PPPTAAEDAV TTPKKKRRPA GTPDPDAEVV SLSPKTLLES 60 DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDSTSAG AAGVAAGAGA AAARKRVFVC 120 PEPSCLHHDP CHALGDLVGI KKHFRRKHSA HKQWACARCA KAYAVHSDYK AHLKTCGTRG 180 HSCDCGRVFS RVESFIEHQD SCSASRDRGQ PGTSHPLASL SRAASSPTPS SDTTPAAPPL 240 ALPYTKLPFF DPLPFHSIEL QLLPPNSPAL PANASLENNY PELHLSLGPP TPAPNGDLRT 300 ATTDKAVADE ARESARRAVE IAEQELAAAR RIRQQAHAEF QKACALRAAA TRQINSILQQ 360 ITCANCQQRL WPLDPIPPAA VGHYSPELGN CDGNGAVCRA SKRTPYPCK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MFKISPSPPR QDPLTAPSPA PPPTAAEDAV TTPKKKRRPA GTPDPDAEVV SLSPKTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDSTSAG AAGVAAGAGA AAARKRVFVC  120
PEPSCLHHDP CHALGDLVGI KKHFRRKHSA HKQWACARCA KAYAVHSDYK AHLKTCGTRG  180
HSCDCGRVFS RVESFIEHQD SCSASRDRGQ PGTSHPLASL SRAASSPTPS SDTTPAAPPL  240
ALPYTKLPFF DPLPFHSIEL QLLPPNSPAL PANASLENNY PELHLSLGPP TPAPNGDLRT  300
ATTDKAVADE ARESARRAVE IAEQELAAAR RIRQQAHAEF QKACALRAAA TRQINSILQQ  360
ITCANCQQRL WPLDPIPPAA VGHYSPELGN CDGNGAVCRA SKRTPYPCK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	39	PKKKRRP
2	34	38	KKKRR
3	34	39	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-103	C2H2 family protein