PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62648.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 486aa MW: 52875 Da PI: 6.0263

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6.1e-17	163	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PKA62648.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212 78*****************......55**********************997 PP
2	AP2	41.6	3.2e-13	255	305	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g PKA62648.1 255 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEVEAARAYDQAAIKCNG 305 89******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MMLMLDLNLV SSGESSSAPE KFFAEGSGYG HKDDSGTSNS SVLNAEGSSI IGEEDSYAPP 60 GFRFGILKDD VEGEDEAEVD ECDNGDPSEA CIITRELFPP PHPLAIADGP PPASSSSSSR 120 HHVINLDFCQ ADSPMEGEIG FLHSQPHQPL VKKSRRGPRS RSSQYRGVTF YRRTGRWESH 180 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN VSDYEEDLKQ MSNLTKEEFV 240 LILRRQSSGF SRGSSKYRGV TLHKCGRWEA RMGQLLGKKY VYLGLFDSEV EAARAYDQAA 300 IKCNGREAVT NFEPSLYQPE LPSKAGCEAA GHEIDLNLSI SQPATSNLKV IDKSMGMELH 360 LGSFVPANGK NIKIDHPACI PIVQPHHLVV APGHSQAWTS TCPVFYTTIE GMAINENAPS 420 APPTPPPSFC SWRINSDSSI PQFAHAASSG FSTINTPPPQ PQLAATAASY HGQLLSPATT 480 HNLFRS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MMLMLDLNLV SSGESSSAPE KFFAEGSGYG HKDDSGTSNS SVLNAEGSSI IGEEDSYAPP  60
GFRFGILKDD VEGEDEAEVD ECDNGDPSEA CIITRELFPP PHPLAIADGP PPASSSSSSR  120
HHVINLDFCQ ADSPMEGEIG FLHSQPHQPL VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN VSDYEEDLKQ MSNLTKEEFV  240
LILRRQSSGF SRGSSKYRGV TLHKCGRWEA RMGQLLGKKY VYLGLFDSEV EAARAYDQAA  300
IKCNGREAVT NFEPSLYQPE LPSKAGCEAA GHEIDLNLSI SQPATSNLKV IDKSMGMELH  360
LGSFVPANGK NIKIDHPACI PIVQPHHLVV APGHSQAWTS TCPVFYTTIE GMAINENAPS  420
APPTPPPSFC SWRINSDSSI PQFAHAASSG FSTINTPPPQ PQLAATAASY HGQLLSPATT  480
HNLFRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-87	AP2 family protein