PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62558.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 495aa MW: 53610.5 Da PI: 6.9153

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.3e-10	129	183	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++ rW+++I+ + + + g f+ta Aa+a+++a+ k++g PKA62558.1 129 SQYRGVTFYRRTSRWESHICLFFSFSeQG-LRKAGGFDTAHAAARAYDRAAIKFRG 183 78*****************54532333.334689****************98 PP
2	AP2	42.6	1.5e-13	226	276	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k++g PKA62558.1 226 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKFNG 276 79******.7**5553..2.26******99*********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MWDLNDSPAN MVGERESFWR RKRREQVPSQ SPENSGSSVL VVEASDEGED ISGCSGKIFG 60 FSFASAAQSP AVTRQFFPTS EPASAGGEDA PPMAHWAGVQ FRLPEALEAP PATGSSARKS 120 RRGPRSRSSQ YRGVTFYRRT SRWESHICLF FSFSEQGLRK AGGFDTAHAA ARAYDRAAIK 180 FRGADADINF SLEDYEEDMK QMGSLTKEEF VHVLRRQSTG FPRGSSKFRG VTLHKCGRWE 240 ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKFNGKDAV TNFDPSIYAE ELGFSGEFGP 300 SWMPEIEDEV LGCSLPSPFA AAAEEAEQNL DLSLGSSAPP RSMSSPMEEE STSGGFDGGH 360 WDQRFPKAGE PIVINGDRKL KLPEEGGRTG LHPHRQTYAS APLMPPAAAG FHFTQHQFRQ 420 PLGDFAGLRA GDGVNLSLAV GSTGRGGGAL ASQPAASAIS PHFAAAASSG FPSQAAKSSQ 480 NWLRFNGLQS FTGLR

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MWDLNDSPAN MVGERESFWR RKRREQVPSQ SPENSGSSVL VVEASDEGED ISGCSGKIFG  60
FSFASAAQSP AVTRQFFPTS EPASAGGEDA PPMAHWAGVQ FRLPEALEAP PATGSSARKS  120
RRGPRSRSSQ YRGVTFYRRT SRWESHICLF FSFSEQGLRK AGGFDTAHAA ARAYDRAAIK  180
FRGADADINF SLEDYEEDMK QMGSLTKEEF VHVLRRQSTG FPRGSSKFRG VTLHKCGRWE  240
ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKFNGKDAV TNFDPSIYAE ELGFSGEFGP  300
SWMPEIEDEV LGCSLPSPFA AAAEEAEQNL DLSLGSSAPP RSMSSPMEEE STSGGFDGGH  360
WDQRFPKAGE PIVINGDRKL KLPEEGGRTG LHPHRQTYAS APLMPPAAAG FHFTQHQFRQ  420
PLGDFAGLRA GDGVNLSLAV GSTGRGGGAL ASQPAASAIS PHFAAAASSG FPSQAAKSSQ  480
NWLRFNGLQS FTGLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-83	AP2 family protein