PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62177.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93359.8 Da    PI: 6.755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182482357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PKA62177.1 24 KYVRYTPEQVEALERVYMECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                5678*****************************************************97 PP
2START158.65e-501733802204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   ++ vi  g  g ++l ++++
  PKA62177.1 173 IAEETMAEFLSKATGTAIDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVVTVIPAGngGNIELLYMQT 270
                 689*******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+  Rdf+++Ry+  l++g++vi+++S++     p     +++vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s  + + 
  PKA62177.1 271 YAPTTLATaRDFWTLRYTTGLEDGSLVICERSLTASVGGPPgppAPNYVRAEMLPSGFLIRPCEGGGSMIHIVDHFDLDAWSVPEVLRPLYESPKILAH 369
                 *********************************98777666688******************************************************* PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  PKA62177.1 370 KMTIAALRHIR 380
                 ******99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MATGAGKEGK TQHLQQQQQM DSGKYVRYTP EQVEALERVY MECPKPSSMR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKEASRLQ TVNRKLTAMN KLLMEENDRL QKQVSHLVYE  120
NGYMRQQIHT ASGATTDTSC ESVVTSGHHH QQQKQKLQHP PRDANNPASL LAIAEETMAE  180
FLSKATGTAI DWVQMVGMKP GPDSIGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKDRP  240
SWYRDCRCLN VVTVIPAGNG GNIELLYMQT YAPTTLATAR DFWTLRYTTG LEDGSLVICE  300
RSLTASVGGP PGPPAPNYVR AEMLPSGFLI RPCEGGGSMI HIVDHFDLDA WSVPEVLRPL  360
YESPKILAHK MTIAALRHIR QIVHETSGEV VYGGGRQPAV LRTFSQRLSR GFNDAINGFV  420
DDGWSLMSSD GGDDVTIAIN SSPSKLLGSH VNSSPLFAFG GGILCAKASM LLQNVPPALL  480
VRFLREHRSE WADCGVDAYS TAALKASSYP FPGMRASTGF HGGQVILPLA QTIENEEFLE  540
VIRLEGSGFS HDDVVAKDLY LLQLCSGVDE NAVGTCAQLV FAPIDESFAD DAPLLPSGFR  600
VIPLEPKAEV HAAARTLDLA SALEVGSGGA TRPTNEAVPN MYNLRSVLTI AFQFTYENHL  660
RENVAVMARQ YVRSVVASVQ RVAMAISPSR AGSLVGAKHL PGSPEALTLA RWISCSYKFH  720
TGSELFRSEP QTGDSLLKLL WHYPEAIMCC TLKASPIFTF ANQAGLDLLE TTLIALQDIT  780
LEKILDDSGR KVLCSEFSKI MQQGFAYLPG GICLSSMGRP VSYDQAVAWK VLDEDNADHC  840
LALMFMNWSF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein