PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61092.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 303aa MW: 31920.9 Da PI: 9.8225

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C +sF++ L H+r+H PKA61092.1 4 HTCKLCFRSFPNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	11.6	0.00083	189	207	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C+ C+k+F++ L H PKA61092.1 189 YQCETCKKVFRSYQALGGH 207 9*********998877666 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MEQHTCKLCF RSFPNGRALG GHMRSHVVTA HAAAAAAAAA VAAAAAVQTA VEESLRMAGS 60 SASISSPEAG NSAGSRGISL APDKPNSSVV QDRESETGSS SPLPSSETPV NNHQRSKRRR 120 RSIPVLPPGP LTSVPNNPSA KEAALSLVML SRDSWMKPEE VVPQERAAGG SRRLPSPKTA 180 KLARGRVRYQ CETCKKVFRS YQALGGHRAT RKKSRCCSPA AEQAPEANVA SGDGNNDEGK 240 TVFQCSLCFE VFSSCQALGG HKRSHYTSPA ATSTPPPSPQ MDSAVPEKQC KTLLDLNLPP 300 PSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-27	C2H2 family protein