PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60742.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 1010aa MW: 113819 Da PI: 4.8935

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PKA60742.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PKA60742.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGINTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPT 240 TIEELEGKRR IDVENQLRKQ DIARNKIQQR QDAPAAILQA NKLNDPEAVR KRSKLMLPAP 300 QISDQELEEI AKMGYASDLA LGSEELAEGS GATRALVADY SQTPRRGMTP LRTPQRTPAG 360 KVDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREIQTPNP LATPLASPGP 420 MGLTPRIGMT PSRDGHSFGL TPKMTPFRDD LHINEDAELQ DSAKLELQRQ EELRRNLRSG 480 LTSLPQPKNE YQIVMQPIPE EDEEMEAKIE EDMSDKIARE KAQEQAMMEA LMRKRSKVLQ 540 RELPRPPAAS LELIKTLLVK GDEDKSSFVP PTLFEQADEM INKELLSLLE HDTAKYPLNE 600 KPEKEKAKGA KRAANGKSST AVPEIEDFEE EELREADSMI MEEVEFLRVA MGHESETFDD 660 FVKARDACLE DLMFFPSRST YGLASVAGGN EKLAALQNDF EIVKKRMDDE AKKATRLEQK 720 IKVLTHGYQM RAGKLLSQIE ATYKQMGTAA TELECFKDLQ KQEELAASYR VSNLTEEVNN 780 QKQLERTLQH RYGELAAEEE RIQGLLEEHK MHLKIEEEIA ARNRAAEEEI AARNRAAEEE 840 IIAARNRAAE EEIAARNNKA EEKFAHDHNV EDEAGGKDET PSINENPATI TISEGNNQGT 900 TDNPTIDVGK LAEINQQQEG AMIVDNTSSE TSSIQTDFPI PDQNSKNDPE EQPDPTPNKD 960 SSSVNVEAAQ LQPETDNTIM VPQVTDNGEE KPVTEASVDP PGSVSSSSSL

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGINTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPT  240
TIEELEGKRR IDVENQLRKQ DIARNKIQQR QDAPAAILQA NKLNDPEAVR KRSKLMLPAP  300
QISDQELEEI AKMGYASDLA LGSEELAEGS GATRALVADY SQTPRRGMTP LRTPQRTPAG  360
KVDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREIQTPNP LATPLASPGP  420
MGLTPRIGMT PSRDGHSFGL TPKMTPFRDD LHINEDAELQ DSAKLELQRQ EELRRNLRSG  480
LTSLPQPKNE YQIVMQPIPE EDEEMEAKIE EDMSDKIARE KAQEQAMMEA LMRKRSKVLQ  540
RELPRPPAAS LELIKTLLVK GDEDKSSFVP PTLFEQADEM INKELLSLLE HDTAKYPLNE  600
KPEKEKAKGA KRAANGKSST AVPEIEDFEE EELREADSMI MEEVEFLRVA MGHESETFDD  660
FVKARDACLE DLMFFPSRST YGLASVAGGN EKLAALQNDF EIVKKRMDDE AKKATRLEQK  720
IKVLTHGYQM RAGKLLSQIE ATYKQMGTAA TELECFKDLQ KQEELAASYR VSNLTEEVNN  780
QKQLERTLQH RYGELAAEEE RIQGLLEEHK MHLKIEEEIA ARNRAAEEEI AARNRAAEEE  840
IIAARNRAAE EEIAARNNKA EEKFAHDHNV EDEAGGKDET PSINENPATI TISEGNNQGT  900
TDNPTIDVGK LAEINQQQEG AMIVDNTSSE TSSIQTDFPI PDQNSKNDPE EQPDPTPNKD  960
SSSVNVEAAQ LQPETDNTIM VPQVTDNGEE KPVTEASVDP PGSVSSSSSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGINTRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein