PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59685.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 388aa MW: 42159.6 Da PI: 10.5651

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.4e-43	216	315	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C+++pyfp e+p+kfanvhk+FGasnv+kll++l++++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++ela +++ PKA59685.1 216 PCAACKLLRRKCLPGCIFSPYFPPEEPHKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVQRLQKELAGVRA 314 7*********************************************************************************************99887 PP DUF260 100 e 100 e PKA59685.1 315 E 315 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MQGCYLVIRK VASRAYTWRD PVPEIRRAAQ GKGQGKRKFD GNSLRAPTPV YIIKEIFSAL 60 QDRGFLPNRG ERQPPQPTCE AKGRSRTLGF GIRLQRSESE GEGAEQDYVR TRATWAWAVG 120 RVGESRESSV RPWAGAVRPR RAVGVAALPE SRESRVGVAA SRRLSDDPEL LLFHSFSASS 180 QRIPLPLSKE EEGGGGGGGG GGDRRMAAST NPSSSPCAAC KLLRRKCLPG CIFSPYFPPE 240 EPHKFANVHK VFGASNVTKL LNELHPHQRE DAVNSLAYEA EARIKDPVYG CVGAISVLQR 300 QVQRLQKELA GVRAELLRYT SGGMSPAGGF PVTPTSAGRA YYQHLQQQSL IGIPSFPNFL 360 PSSSWNASSS NSSSGALNQR EGGGRRSM

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MQGCYLVIRK VASRAYTWRD PVPEIRRAAQ GKGQGKRKFD GNSLRAPTPV YIIKEIFSAL  60
QDRGFLPNRG ERQPPQPTCE AKGRSRTLGF GIRLQRSESE GEGAEQDYVR TRATWAWAVG  120
RVGESRESSV RPWAGAVRPR RAVGVAALPE SRESRVGVAA SRRLSDDPEL LLFHSFSASS  180
QRIPLPLSKE EEGGGGGGGG GGDRRMAAST NPSSSPCAAC KLLRRKCLPG CIFSPYFPPE  240
EPHKFANVHK VFGASNVTKL LNELHPHQRE DAVNSLAYEA EARIKDPVYG CVGAISVLQR  300
QVQRLQKELA GVRAELLRYT SGGMSPAGGF PVTPTSAGRA YYQHLQQQSL IGIPSFPNFL  360
PSSSWNASSS NSSSGALNQR EGGGRRSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-65	LBD family protein