PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA59568.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 727aa    MW: 78653.7 Da    PI: 5.7296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA59568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.64.7e-863617171374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 lv++L+++Ae v++g++  a+ +Larl+++  sp g+p+ R a+yf+eAL+   ++ +++   a +ps+ s+ +++ +l+a+k fs+vsP+l+f+++ta
  PKA59568.1 361 LVDQLFRAAELVEAGNFIGAHGILARLNHQlPSPLGNPLLRSAFYFKEALKLLANSITPQAT-APSPSSISPLDVVLKLSAYKSFSDVSPLLQFTNFTA 458
                 6899************************998********************99999777776.55666666789************************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  qa+le++  ++ +HiiDfd++ G+QW ++l++La R+++  p l+iT+++sp +++ +el   +++L++fA+ l++pfe+n+l   ++e++++    v
  PKA59568.1 459 TQALLEELGDANSIHIIDFDMGIGGQWSSFLHELAHRRSPaIPLLKITALVSPPAFHPHELLLARDNLTHFAADLNIPFEINIL---NIESFDPAV--V 552
                 ***********************************99866268****************************************8...677776654..4 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                   +E++aVnl +     l    sl    +++L+lvk+l+Pk+v  v    d  + sF ++fl+a++ ++ l+ds++a  +++ + ++k+E+++l+++i+
  PKA59568.1 553 ILNETIAVNLPIGASLGL----SL----PTLLRLVKQLEPKIVLSVGYAFDWCELSFSHHFLHAFQSFTILLDSIDAV-GTNLDVANKIEKFVLQPKIE 642
                 569*********665555....44....56*********************************************988.7788**************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+v  ++       e+++ W + +e+ GF p ++s+++++qa++l+++++++g++ve++++sl+l+W++ +L s+SaW+
  PKA59568.1 643 NCVISRHCT----GEKMMPWANLFESTGFVPFQFSNFTETQAECLMKRMQVRGFHVEKRQASLYLYWQRGELASISAWK 717
                 ****99998....99***************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MKGSPFDFQG KGLLQVVESK EEEGRVIWSN CSRKRKTSEI LEPRSVLDQR SPSPPTSTST  60
VSSSLGGAAG STDKAGVVVV LENPATAAGE AHDFGSLALD FGGLAGGGEK CGTAAEDWEV  120
MLSDSAAYLG QEQTFLHWIM GDMEDSSPPS KQQDPLLSSQ PSLLEFDSGT FGLVDPGFGF  180
DSFGGIVGCP PVSVPASAID GDFYSSDALS LVSSKTCKQN PSTLLIQPGP LPPAVSSSVF  240
SPPAANLVSL PSPLAASTFF HERTEEKPYL FNPILNQHQQ THVPPNPSFF VPLSSFSAPP  300
EVPQTPNLLL PPLPKRHHSI SLDHGLFSGQ PVPYHLQQGP MKPKVLAVGD EAAMAVQHQA  360
LVDQLFRAAE LVEAGNFIGA HGILARLNHQ LPSPLGNPLL RSAFYFKEAL KLLANSITPQ  420
ATAPSPSSIS PLDVVLKLSA YKSFSDVSPL LQFTNFTATQ ALLEELGDAN SIHIIDFDMG  480
IGGQWSSFLH ELAHRRSPAI PLLKITALVS PPAFHPHELL LARDNLTHFA ADLNIPFEIN  540
ILNIESFDPA VVILNETIAV NLPIGASLGL SLPTLLRLVK QLEPKIVLSV GYAFDWCELS  600
FSHHFLHAFQ SFTILLDSID AVGTNLDVAN KIEKFVLQPK IENCVISRHC TGEKMMPWAN  660
LFESTGFVPF QFSNFTETQA ECLMKRMQVR GFHVEKRQAS LYLYWQRGEL ASISAWKCRR  720
ASSSIAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237SRKRKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-94GRAS family protein