PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA59379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27186.3 Da PI: 7.7297 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PKA59379.1 84 YKCKTCSKCFPSFQALGGHRASH 106 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PKA59379.1 160 HECSICGSEFSSGQALGGHMRRH 182 78********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MEETPGPNQP ADECLAVIAR RKRTKSVPTQ PPSSSSSSEF SSCATTEEEE DMANCLILLA 60 QGRSAAPSGK FTTRTSGKAG FYVYKCKTCS KCFPSFQALG GHRASHKKPK FSPAPAPAPP 120 TIDEDSIQLS INSFSEPPDP APAAAAGSGG GSGSGKQKVH ECSICGSEFS SGQALGGHMR 180 RHRPSNIAEQ PPEARKEKSP LSLDLNLPAP SDEDHHHQSG GGELRRPLSS VSAGPPTAFA 240 FSTKAQLILP SASALVDCPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 6e-38 | C2H2 family protein |