PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59194.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Protein Properties

Length: 403aa MW: 45991.9 Da PI: 9.4221

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.3	1.2e-17	18	108	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv+ +l s+ l++p f +h + + e + l+ +s+ +W v l kksg+ +l++GW+eF++++ L +gDf+vF++dg+ +f +v +f+ PKA59194.1 18 FFKVF--FPHLCSRTLRIPPAFE-QHvE-D-EAPARFYLKGPSNIVWGVDL--VKKSGGLFLANGWEEFASDHSLAAGDFLVFQYDGNVTF--LVLIFD 107 67777..34566677****95.7734.3.36678***********..****************************998888..9*99 PP S CS B3 99 k 99 k PKA59194.1 108 K 108 8 PP
2	B3	46.6	6e-15	278	365	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ s+v l lp +f e+ + s ++ l+d + ++W+v++ ++ +r l++GW +F+ n+L++ D+++F+l+ +++++v++fr PKA59194.1 278 IMKDSYVYHGFYLALPGSFPFEYlPN---VSGDIYLTDAKQKKWTVNY--IRT-ERPALSAGWCRFAVTNNLEADDVCIFELIA--KAHMKVHIFR 365 5778999999999****8888432...3458***********..343.4668*********************997..6778999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MPISSGSAAP LPRRCHRFFK VFFPHLCSRT LRIPPAFEQH VEDEAPARFY LKGPSNIVWG 60 VDLVKKSGGL FLANGWEEFA SDHSLAAGDF LVFQYDGNVT FLVLIFDKTA CEKEGAFSVT 120 PTCENKSFLL DGDKGEVEEE GKTEDLPRKR KRALDDVVAV KETRKREKTS PSKNICANDE 180 PLPKRKSVQK LIAQRISRRL GNCSTKISES SSDTCKKALV CLTGVKPKRT RNGRTDACQR 240 NMWRGYISQR RPVSQKEIDR ALQKAQSFKP RNPYCLMIMK DSYVYHGFYL ALPGSFPFEY 300 LPNVSGDIYL TDAKQKKWTV NYIRTERPAL SAGWCRFAVT NNLEADDVCI FELIAKAHMK 360 VHIFRVVEDF KPLLRFAGLK WYVETEKFKA LMKESESLEE DNN

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MPISSGSAAP LPRRCHRFFK VFFPHLCSRT LRIPPAFEQH VEDEAPARFY LKGPSNIVWG  60
VDLVKKSGGL FLANGWEEFA SDHSLAAGDF LVFQYDGNVT FLVLIFDKTA CEKEGAFSVT  120
PTCENKSFLL DGDKGEVEEE GKTEDLPRKR KRALDDVVAV KETRKREKTS PSKNICANDE  180
PLPKRKSVQK LIAQRISRRL GNCSTKISES SSDTCKKALV CLTGVKPKRT RNGRTDACQR  240
NMWRGYISQR RPVSQKEIDR ALQKAQSFKP RNPYCLMIMK DSYVYHGFYL ALPGSFPFEY  300
LPNVSGDIYL TDAKQKKWTV NYIRTERPAL SAGWCRFAVT NNLEADDVCI FELIAKAHMK  360
VHIFRVVEDF KPLLRFAGLK WYVETEKFKA LMKESESLEE DNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	168	KRKRALDDVVAVKETRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-30	B3 family protein