PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58883.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family NF-YC
Protein Properties Length: 197aa    MW: 21661.4 Da    PI: 4.8399
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.27.5e-56151191102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   +e+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++diaaa+trtdifdflvdiv
  PKA58883.1  15 QLQMFWSYQrqeVEQAADFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDIAAAITRTDIFDFLVDIV 113
                 89*****9988899************************************************************************************* PP

       NF-YC  97 prdelk 102
                 prd++k
  PKA58883.1 114 PRDDIK 119
                 ***975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MENQGYQQQL PQQQQLQMFW SYQRQEVEQA ADFKNHQLPL ARIKKIMKAD EDVRMISAEA  60
PVLFAKACEL FILELTIRSW LHAEENKRRT LQRNDIAAAI TRTDIFDFLV DIVPRDDIKE  120
NPAGSGPSAA AGVPYYHPAM GAGMYVGQPA AAVAWPPVWA EDGPEPTYGG APSEQGYVGS  180
GHPPSPSPSP PQPPAGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894RRTLQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-71NF-YC family protein