PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA58604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27436 Da PI: 10.0046 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r kr++lg+f taeeAa+ +++a+ +l+g PKA58604.1 99 RFRGVRRRP-WGKWAAEIRDPS----RrKRVWLGTFETAEEAAAVYDHAAVRLKG 148 69*******.**********84....34************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MQISNRSNRL DLSSLPMKFA AQMMPDGKRR RLRPRLLRIF FTDADATDSS SCDEEPAGLD 60 RRRARRQVLE IGFGVGARQI RDRRPETKRR AAAADDGRRF RGVRRRPWGK WAAEIRDPSR 120 RKRVWLGTFE TAEEAAAVYD HAAVRLKGAR AVTNFPTPAL PAKVEKSVDE GSGTLPSPTS 180 VLRYDVEQTA FDCLGFSNVD AFGLSVEPPL SLTEFYRPKQ YCWEVEFGDF NADDFSLEVV 240 SF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 32 | KRRRL |
2 | 29 | 36 | RRRLRPRL |
3 | 104 | 123 | RRRPWGKWAAEIRDPSRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61630.1 | 7e-17 | ERF family protein |