PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA58533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 26224.4 Da PI: 9.3502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 61 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ PKA58533.1 61 RGHWRPAEDAKLRELVAQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 106 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 113 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ PKA58533.1 113 KKSFTEEEEERLLSAHRFYGNK-WALIARIFP-GRTDNAVKNHWHV 156 678*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGFSPVSPPP NVFPAVADGD GRSEEISLPL HQLLSVGEGS NGSEDQEGTE NESGQSKLCA 60 RGHWRPAEDA KLRELVAQFG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INKKSFTEEE 120 EERLLSAHRF YGNKWALIAR IFPGRTDNAV KNHWHVIMAR RHREQFNACR RRKHSNPISV 180 NCGNNSSSAD SAISNNSSVN RNIHGHGFFS GSFLFMLLLL YFLSKSFFLG LLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-68 | MYB family protein |