PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58328.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

E2F/DP

Protein Properties

Length: 471aa MW: 51999.2 Da PI: 4.7203

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	78.9	4.6e-25	144	208	2	71
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 + sL++lt+kf++ll+++++g+++ln++a++L dv ++RRiYDi+NVLe+++liekk kn i wkg PKA58328.1 144 FDCSLGVLTKKFISLLKHAQDGVLDLNKAAETL---DV--QKRRIYDITNVLEGIGLIEKKLKNCICWKG 208 678****************************.....****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MSAGRAAAKC SGTPSRDVFR PLSRHLPFPS ARPPFADSEE YHQFSTADGR RIADELHEGL 60 VIKTPLKRKP EHELNECETN EHSCAPVYSE SVTSLLHAPK PSKAGRRCAR SKSGKCNKPG 120 VQTPMPYFGS PSSNSLTLSG TCRFDCSLGV LTKKFISLLK HAQDGVLDLN KAAETLDVQK 180 RRIYDITNVL EGIGLIEKKL KNCICWKGFD KNLSPGEAGD GVSLLQVEVE NLISNEHELD 240 ERISDMRERL RVLSENESNK KWLYVTEDDI KTIPCFQNET LIAIKAPHGT TLEVPDPDEA 300 FEYPRSRYRI VLRSSMGPID VYLVSQFEKF EEMTGVEVPP SLSPNSGSWL GGNIVNADVV 360 EENRAKDIEL QESDASCTNT NISPEFGGLT KIVPSDLDAD ADYWLLTDSC VAMSDMWSTH 420 EDHASVLKSM SQDDDHCNDA LLDPDDFLMD ATPPAQNSSI VDPPSHSDTA G

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MSAGRAAAKC SGTPSRDVFR PLSRHLPFPS ARPPFADSEE YHQFSTADGR RIADELHEGL  60
VIKTPLKRKP EHELNECETN EHSCAPVYSE SVTSLLHAPK PSKAGRRCAR SKSGKCNKPG  120
VQTPMPYFGS PSSNSLTLSG TCRFDCSLGV LTKKFISLLK HAQDGVLDLN KAAETLDVQK  180
RRIYDITNVL EGIGLIEKKL KNCICWKGFD KNLSPGEAGD GVSLLQVEVE NLISNEHELD  240
ERISDMRERL RVLSENESNK KWLYVTEDDI KTIPCFQNET LIAIKAPHGT TLEVPDPDEA  300
FEYPRSRYRI VLRSSMGPID VYLVSQFEKF EEMTGVEVPP SLSPNSGSWL GGNIVNADVV  360
EENRAKDIEL QESDASCTNT NISPEFGGLT KIVPSDLDAD ADYWLLTDSC VAMSDMWSTH  420
EDHASVLKSM SQDDDHCNDA LLDPDDFLMD ATPPAQNSSI VDPPSHSDTA G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-118	E2F/DP family protein