PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58191.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 465aa MW: 48651.6 Da PI: 9.4497

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PKA58191.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	14	0.00015	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PKA58191.1 139 WKCDKCSKNYAVQSDWKAHVKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MLMAMELENS SGIRVSTSAS SEVSASGKPM PPPKKKRNLP GTPDPNAEVI ALSPGALLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRAGAEVR KRVYVCPEAS CVHHNPSRAL 120 GDLTGIKKHF GRKHGEKKWK CDKCSKNYAV QSDWKAHVKT CGAREYRCDC GTIFSRKDSF 180 ITHRTFCDVL AVERTMSAQG NASVPEPANP RVDEEQKASP PVNLPIQQAE NAAGGLHHHP 240 PPPPPPSTSV NSSGSSSFTT TSGGSSNISP TTTTTSTSFF ASLFASSSAA ASTSATPTAS 300 FSAFIVGTSN HRNPESTANA ATPETRCHFT APQPSPHISA TALLQKAAEL GARSSSASFF 360 RGFGLSTSSS AIEAAAGGGG LQCLQPQDQP CEPSEPLFSA GLFLGPSSMF GPKPATLDLL 420 GLRMGQASST TANGLSACIN GPPMGVKSGA FAPPAKAGSG GRPEG

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MLMAMELENS SGIRVSTSAS SEVSASGKPM PPPKKKRNLP GTPDPNAEVI ALSPGALLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRAGAEVR KRVYVCPEAS CVHHNPSRAL  120
GDLTGIKKHF GRKHGEKKWK CDKCSKNYAV QSDWKAHVKT CGAREYRCDC GTIFSRKDSF  180
ITHRTFCDVL AVERTMSAQG NASVPEPANP RVDEEQKASP PVNLPIQQAE NAAGGLHHHP  240
PPPPPPSTSV NSSGSSSFTT TSGGSSNISP TTTTTSTSFF ASLFASSSAA ASTSATPTAS  300
FSAFIVGTSN HRNPESTANA ATPETRCHFT APQPSPHISA TALLQKAAEL GARSSSASFF  360
RGFGLSTSSS AIEAAAGGGG LQCLQPQDQP CEPSEPLFSA GLFLGPSSMF GPKPATLDLL  420
GLRMGQASST TANGLSACIN GPPMGVKSGA FAPPAKAGSG GRPEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-106	C2H2 family protein