PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA57654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C3H | ||||||||
Protein Properties | Length: 417aa MW: 44600.3 Da PI: 8.3221 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 46 | 72 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e C +++rtG C +GdrC+++H++ PKA57654.1 46 PGEEDCAYYMRTGACGFGDRCRYNHPR 72 5899*********************96 PP | |||||||
2 | zf-CCCH | 40.2 | 5.7e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC ++++tGtCk+G++Ck++H++ PKA57654.1 96 QPLCEYYMKTGTCKFGSSCKYHHPR 120 79*********************96 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG+Ck+G++CkF+H++ PKA57654.1 140 PGERECSYYLRTGQCKFGSTCKFHHPQ 166 5789*********************97 PP | |||||||
4 | zf-CCCH | 40.8 | 3.6e-13 | 288 | 313 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++rtG Ck+G++Ck++H+ PKA57654.1 288 PGQPICQFYMRTGDCKFGSTCKYHHP 313 5789*********************9 PP | |||||||
5 | zf-CCCH | 31.8 | 2.5e-10 | 337 | 360 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a+ G Ck+G++CkF H++ PKA57654.1 337 QICAYYAQHGVCKFGPTCKFDHPM 360 58********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence |
MEPHGRNPAR EGPSADPTAG FEESMRRLGL GGGSGSGASF PYPERPGEED CAYYMRTGAC 60 GFGDRCRYNH PRDRGGMPVG GAFQPVAGVY PERVGQPLCE YYMKTGTCKF GSSCKYHHPR 120 EGVGTLQPVS LSYYGYPLRP GERECSYYLR TGQCKFGSTC KFHHPQPIGA SVPSAAPVFY 180 PAVQPPSTPS PQQIPQVGGW QIGKSGPYGP MVLSAGVVPV PGWSPYLTPL GQAISPGMQQ 240 SVAAVSQSGA GTQLSPPAPT YAVSYSPFSS SVGPSISAQK EHLFSQRPGQ PICQFYMRTG 300 DCKFGSTCKY HHPLDWSMPI TNCLLSPLGL PLRPGAQICA YYAQHGVCKF GPTCKFDHPM 360 GTLSYSSSAS SLLDMPVAPY PIGFSQPTLA PSSSSSELRP NFFSSKDAFS TQTFSSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-115 | C3H family protein |