PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57640.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 386aa MW: 42045.7 Da PI: 5.7742

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	5.9e-07	10	49	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e + +C+ +++ lC C e H H PKA57640.1 10 PPCDFCGETTAVVYCRADSSRLCLACDREVHAAntvssrH 49 78****99*******************655555554 PP
2	CCT	58.8	1.9e-20	321	365	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R ++RYkeKrktR+++K irYesRKa+A++R R+KGrF+k+++ PKA57640.1 321 RSSVISRYKEKRKTRRYDKLIRYESRKARADNRVRIKGRFAKANQ 365 67789*************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVAADADASP PCDFCGETTA VVYCRADSSR LCLACDREVH AANTVSSRHH RSLLCDLCAA 60 ASAVIFCSSP PHRLALCSNC DFDAHRAADH RHDRRAVEPF TGCPAGAELA AAIGIEDVKG 120 VFSGEANGGG GVQEGWAWDA PPVFSWDDLF LPLTTTPFHG FQALGTHPPP KDRNSSCGKR 180 KEEIHQQLRE IIKGEIDGVK SEEEIEPELE LASVPLENFH GGKLGSNYDY NPVFVDVRSC 240 EASNLQWNQN DNLDAGNLTE ISSEQQIRSS SLLNPTILDF SVEAAAPASL NGGSDKDSTN 300 PTSFDDPTSA LHKAALELPD RSSVISRYKE KRKTRRYDKL IRYESRKARA DNRVRIKGRF 360 AKANQVGKLD GNCLNQTQSS MESKNG

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVAADADASP PCDFCGETTA VVYCRADSSR LCLACDREVH AANTVSSRHH RSLLCDLCAA  60
ASAVIFCSSP PHRLALCSNC DFDAHRAADH RHDRRAVEPF TGCPAGAELA AAIGIEDVKG  120
VFSGEANGGG GVQEGWAWDA PPVFSWDDLF LPLTTTPFHG FQALGTHPPP KDRNSSCGKR  180
KEEIHQQLRE IIKGEIDGVK SEEEIEPELE LASVPLENFH GGKLGSNYDY NPVFVDVRSC  240
EASNLQWNQN DNLDAGNLTE ISSEQQIRSS SLLNPTILDF SVEAAAPASL NGGSDKDSTN  300
PTSFDDPTSA LHKAALELPD RSSVISRYKE KRKTRRYDKL IRYESRKARA DNRVRIKGRF  360
AKANQVGKLD GNCLNQTQSS MESKNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	5e-41	CO-like family protein