PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57478.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 393aa MW: 43443.6 Da PI: 6.322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.2e-10	219	266	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PKA57478.1 219 SHSLAERVRREKISQRMKLLQDLVPGC----NKITGKALMLDEIINYVQSLQ 266 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MNCRTPPPDQ LFSACLPKLN WEQPTDPPLS SIIPLPPLPP GPAAAAISSE ISGIVGNPLN 60 SMPANRLTNF LTDPGFTERA ARYSCFSSGH YGAFAGQFSR PDAGKLSRVS STQSLKSKEF 120 TEIGDTELGS GREDSSVTDP ISSPGESNVW KRKTLSKCEA KVEEERDLNA KKCRLTENSE 180 DNKDQNGVKN KVNDNGSKVP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISQRMKLLQD 240 LVPGCNKITG KALMLDEIIN YVQSLQRQVE FLSMKLATVD PQQDFNLDNL IAKETLMSQG 300 NNTSLPNSVY PFENLAAVFP FSHHSSVCHI ESDQMQPTSH DLFGASASSQ HEHFWDDELH 360 SIIQMGYAPN QEIGASSHNF HGQLPSFNMK VEH

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MNCRTPPPDQ LFSACLPKLN WEQPTDPPLS SIIPLPPLPP GPAAAAISSE ISGIVGNPLN  60
SMPANRLTNF LTDPGFTERA ARYSCFSSGH YGAFAGQFSR PDAGKLSRVS STQSLKSKEF  120
TEIGDTELGS GREDSSVTDP ISSPGESNVW KRKTLSKCEA KVEEERDLNA KKCRLTENSE  180
DNKDQNGVKN KVNDNGSKVP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISQRMKLLQD  240
LVPGCNKITG KALMLDEIIN YVQSLQRQVE FLSMKLATVD PQQDFNLDNL IAKETLMSQG  300
NNTSLPNSVY PFENLAAVFP FSHHSSVCHI ESDQMQPTSH DLFGASASSQ HEHFWDDELH  360
SIIQMGYAPN QEIGASSHNF HGQLPSFNMK VEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-66	bHLH family protein