PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57265.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 655aa MW: 71644.3 Da PI: 5.8374

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	424	446	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+f+++ G C+ Gd CkF+H+ PKA57265.1 424 VKPCNFHLK-GRCQQGDLCKFSHD 446 579****.***********6 PP
2	zf-CCCH	21.4	4.4e-07	481	500	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+++ tG C++Gd+CkF+H PKA57265.1 481 CHNYISTGSCSRGDKCKFSH 500 9******************* PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MKEMDLETLS SEGRRCSSFS SVKPFTRCRR HLDSASYRSL VRIFSHCLDL SLVSSELQPK 60 GSNSEPEDSL SGKDPPSGAV GADLPGECFP DEGKKGTEGF ADGAGKEGVA AAGANLVDLD 120 IDIFDPLMEK EIEKRVSSEL LSSLMSDCSR LLDAPEADPC LRGESQEGKG IDGHDEEGEW 180 KVKQANVDGL SERIRHTSEI SAFGNEHEVG ELPPNVFREN LDSGNRGAEE LGELPSSKTV 240 DDTGTEKPVL DEGRDGGSNA VEEEESRKQQ TDDEDFEEGE IPDDVQDLSD SENNVSGGTV 300 LEDRKKDGMK EKDINDIASC LTVPDKDEEI KHLTFVKLPA VVLSGNDFDY KAGLPNTAED 360 DLKDMAVQSM QKVVKVREKR KHAPPTDERK FKKKLAKKRK RAQKNKELGV KKLKLHPVLK 420 PKEVKPCNFH LKGRCQQGDL CKFSHDATPL TKSMPCKYFA CNSCLKGDDC PFDHELSKYS 480 CHNYISTGSC SRGDKCKFSH KIATTGASSQ ALLADNICSL LTSETTSSKN NFVKKNVSLS 540 ATPQGTKVTP PIMHKPLNEI TRVPKGISFL SFGATKTNSP CKLTTHVNKP GHMEVHNQKQ 600 QDMGFSMSAC HNSSNLTMKV LETIKGSSVS SSGGTLSHEV SEATKILEEF LFGQH

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MKEMDLETLS SEGRRCSSFS SVKPFTRCRR HLDSASYRSL VRIFSHCLDL SLVSSELQPK  60
GSNSEPEDSL SGKDPPSGAV GADLPGECFP DEGKKGTEGF ADGAGKEGVA AAGANLVDLD  120
IDIFDPLMEK EIEKRVSSEL LSSLMSDCSR LLDAPEADPC LRGESQEGKG IDGHDEEGEW  180
KVKQANVDGL SERIRHTSEI SAFGNEHEVG ELPPNVFREN LDSGNRGAEE LGELPSSKTV  240
DDTGTEKPVL DEGRDGGSNA VEEEESRKQQ TDDEDFEEGE IPDDVQDLSD SENNVSGGTV  300
LEDRKKDGMK EKDINDIASC LTVPDKDEEI KHLTFVKLPA VVLSGNDFDY KAGLPNTAED  360
DLKDMAVQSM QKVVKVREKR KHAPPTDERK FKKKLAKKRK RAQKNKELGV KKLKLHPVLK  420
PKEVKPCNFH LKGRCQQGDL CKFSHDATPL TKSMPCKYFA CNSCLKGDDC PFDHELSKYS  480
CHNYISTGSC SRGDKCKFSH KIATTGASSQ ALLADNICSL LTSETTSSKN NFVKKNVSLS  540
ATPQGTKVTP PIMHKPLNEI TRVPKGISFL SFGATKTNSP CKLTTHVNKP GHMEVHNQKQ  600
QDMGFSMSAC HNSSNLTMKV LETIKGSSVS SSGGTLSHEV SEATKILEEF LFGQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	401	KRKHAPPTDERKFKKKLAKKRKR
2	396	402	AKKRKRA
3	398	414	KRKRAQKNKELGVKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	6e-07	C3H family protein