PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA57184.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 292aa    MW: 32930.4 Da    PI: 9.5537
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA57184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-3183133151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  PKA57184.1  83 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 133
                 79***********************************************95 PP
2K-box76.95.2e-26153241593
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                 sg+ +e + ++++ qe+akL+ +i+ Lq+ +Rhl+G++L+sL++keL+qLe++Le+++++iRskK+  l +   +l+ k  e+++e++a
  PKA57184.1 153 SGSLVEVNSHQYYLQESAKLRHQIQLLQNANRHLMGDGLSSLTVKELKQLENRLERGITRIRSKKEVELQNDNMYLRAKIAETEREQQA 241
                 333389999**********************************************************************9999998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEIGPGRCAS SCARSTRPIG TCERDLSPVA VASCVRVYLQ NKIVIANEPF GPQKNQKNPP  60
VLFCGSSPKL KERSMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEIALI  120
VFSSRGRLYE YSNNSIKATI ERYKKACADS SNSGSLVEVN SHQYYLQESA KLRHQIQLLQ  180
NANRHLMGDG LSSLTVKELK QLENRLERGI TRIRSKKEVE LQNDNMYLRA KIAETEREQQ  240
ANILQAGADF ALPTFDSRSY YHVNMLEAAS YTHHQEQTAL HLGYESKTDP GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.26e-94MIKC_MADS family protein