PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA56758.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 395aa    MW: 43051.2 Da    PI: 8.7309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA56758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-264291150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien+ nrqvtfskRrng++KKA+EL+vLCd+++a+i+fs++ +l  +s
  PKA56758.1 42 KRIENSVNRQVTFSKRRNGLIKKAYELCVLCDIDIALIMFSPSHRLSLFS 91
                79*****************************************9998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MHRLYSSMSS RTLGAYARPT VEVQFSVHRQ RPSAVAGKLQ IKRIENSVNR QVTFSKRRNG  60
LIKKAYELCV LCDIDIALIM FSPSHRLSLF SGRRRIEDVL AKYINLPEHD RGGSIVQNKE  120
YLLRTLEKLK CESDMAAQIN KFFEPDPMTM TSLSALEPCE KFLMETLSRV NDRKKYLLSS  180
HLAGVSACDP SASIQMYLQP HQEGLPSVFN NELVQWVPDG DSNSNQPLFV NSDHLLSLSS  240
NAPCVHAGRV KVATRGLLAC RSGHGGCTVG LCSHAGRSSM VTIRKSLTLV CAMRSTAKGR  300
RKKGDNGMYN VISSAASIPV DPLVASDTWH QAYASTELLS ALIPSPPFPL IQNSLAAVEL  360
PPAEGAASCP HVPGEDDGAS RAEAYESNSG PANVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.23e-57MIKC_MADS family protein