PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56695.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 416aa MW: 46333.2 Da PI: 6.709

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	167	213	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+llv++v+q+G + W+ +a++++ gR +kqc++rw+++l PKA56695.1 167 KGQWTLEEDKLLVKLVEQYGLRKWSHVAQMLQ-GRIGKQCRERWHNHL 213 799***************************.***********97 PP
2	Myb_DNA-binding	56.2	8e-18	219	261	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eEd++l++a+ G++ W+ Ia++++ gRt++++k++w+ PKA56695.1 219 KDSWSEEEDKILIEAHSAIGNK-WAEIAKRLP-GRTENSIKNHWN 261 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MDFQCFKASN IARSHEFLTA SETCYPSVDQ FHDPLHLHGI DDPYDISCSD DAGSYGFAGT 60 GGTPIMSKLF DSPSIINAHL QASGFRDHEI GILLQADHHP PPPLSSSLPS DHHHHYLISQ 120 ASNMVPGVNP FIAGYVSGDR TIGRSSGNMR KINGNGMKIQ QRANVIKGQW TLEEDKLLVK 180 LVEQYGLRKW SHVAQMLQGR IGKQCRERWH NHLRPNIKKD SWSEEEDKIL IEAHSAIGNK 240 WAEIAKRLPG RTENSIKNHW NATKRRQFAR RRCRRGSNKH PKSSGSSLLQ DYIKSLSSAN 300 PSLPATAPPP PPPPPPPEAE TAAEIGGAAD WFDFGDVPEE LMLLDKKEME EMCDVGFLLD 360 QLSDFGSSGS SGRETEAAPE LMVIKREMDL VEMISDHQII VSCSESRSFK DHHLVP

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MDFQCFKASN IARSHEFLTA SETCYPSVDQ FHDPLHLHGI DDPYDISCSD DAGSYGFAGT  60
GGTPIMSKLF DSPSIINAHL QASGFRDHEI GILLQADHHP PPPLSSSLPS DHHHHYLISQ  120
ASNMVPGVNP FIAGYVSGDR TIGRSSGNMR KINGNGMKIQ QRANVIKGQW TLEEDKLLVK  180
LVEQYGLRKW SHVAQMLQGR IGKQCRERWH NHLRPNIKKD SWSEEEDKIL IEAHSAIGNK  240
WAEIAKRLPG RTENSIKNHW NATKRRQFAR RRCRRGSNKH PKSSGSSLLQ DYIKSLSSAN  300
PSLPATAPPP PPPPPPPEAE TAAEIGGAAD WFDFGDVPEE LMLLDKKEME EMCDVGFLLD  360
QLSDFGSSGS SGRETEAAPE LMVIKREMDL VEMISDHQII VSCSESRSFK DHHLVP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	5e-54	MYB family protein