PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56613.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GeBP

Protein Properties

Length: 411aa MW: 45511.5 Da PI: 4.4469

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115	4.6e-36	134	232	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw+eeDei +LqG+++f++++g+ +++ d+ fye+ kk+++++++k+ql+eK+rrLKkK+++ v+++ sgke+sf+++h+q ++e+s+kiW PKA56613.1 134 LFQRLWTEEDEIKILQGFLEFTTQRGTthASHQyDTGPFYEQTKKQLQLDFNKNQLIEKLRRLKKKYRNVVSRMVSGKEFSFKSAHEQTTYEISRKIWS 232 79**********************98867778**************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MPPAEEEEEA VFDDDDELED TDGDDSDMDD DDDDDEEEDS PEATHPLRRS VAAQPLRPPN 60 AAEPVFTNPN PNLDHSYTIS TADVAAPQNG SMMAAPVVSE ANASSSQAVQ FMSPAAESRR 120 SAAISGAVDD SRRLFQRLWT EEDEIKILQG FLEFTTQRGT THASHQYDTG PFYEQTKKQL 180 QLDFNKNQLI EKLRRLKKKY RNVVSRMVSG KEFSFKSAHE QTTYEISRKI WSSSIKRGRD 240 SDDDEFNPNP ASAIVELSPA VTADGAAVIS GRRLSRRRRI KRRAAEEDQA ATVETAVEVP 300 IAVPTAPASS APIPSLIEEA VKSCLSPLFK ELIQSAMAGP PEGLIPAIIS GNGGGFFRMN 360 PLQLEKGNLE DEKWRNQHIL ELEVYLKRIE LMRDQIKSAL DELKAPLAGD S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MPPAEEEEEA VFDDDDELED TDGDDSDMDD DDDDDEEEDS PEATHPLRRS VAAQPLRPPN  60
AAEPVFTNPN PNLDHSYTIS TADVAAPQNG SMMAAPVVSE ANASSSQAVQ FMSPAAESRR  120
SAAISGAVDD SRRLFQRLWT EEDEIKILQG FLEFTTQRGT THASHQYDTG PFYEQTKKQL  180
QLDFNKNQLI EKLRRLKKKY RNVVSRMVSG KEFSFKSAHE QTTYEISRKI WSSSIKRGRD  240
SDDDEFNPNP ASAIVELSPA VTADGAAVIS GRRLSRRRRI KRRAAEEDQA ATVETAVEVP  300
IAVPTAPASS APIPSLIEEA VKSCLSPLFK ELIQSAMAGP PEGLIPAIIS GNGGGFFRMN  360
PLQLEKGNLE DEKWRNQHIL ELEVYLKRIE LMRDQIKSAL DELKAPLAGD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	RRLSRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	8e-42	GeBP family protein