PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56459.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 463aa MW: 50279.8 Da PI: 9.6201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PKA56459.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	11.3	0.001	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PKA56459.1 153 WKCDKCSKKYAVQSDWKAHSKIC 175 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MVKGFIVPQQ HQQVKESMQN LASASGKASV SSSEETPNPS RNPPASLKRK RSLPGNPDPD 60 SEVVALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRAN KEVKKKVYVC 120 PEVTCVHHHP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY 180 RCDCGAIFSR RDSFITHRAF CDVLAEDGAR TMAAGNSFAS LASSSLPIQA QIPPLLTTVK 240 DHQYYEPIKK ENHQQYPFCS SAPEMPPPWH GAGHYGITNS SVASLNHLGS PDVSHFQMAV 300 PPPPPPPPQM SATALLQKAA QMGSTASRSP PLISRMFGNG INVSRDNPLG VQLTPVMGAD 360 GGGGGGGSTG KISLFRDEML NSLAPCDSGF DFREGFGGVI RSQREKNGGG GGGGGGGGRN 420 DNLAGLTRDF LGLTNPWSTD ILNPADFAPY MPSSFEHEDK KQW

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MVKGFIVPQQ HQQVKESMQN LASASGKASV SSSEETPNPS RNPPASLKRK RSLPGNPDPD  60
SEVVALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRAN KEVKKKVYVC  120
PEVTCVHHHP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY  180
RCDCGAIFSR RDSFITHRAF CDVLAEDGAR TMAAGNSFAS LASSSLPIQA QIPPLLTTVK  240
DHQYYEPIKK ENHQQYPFCS SAPEMPPPWH GAGHYGITNS SVASLNHLGS PDVSHFQMAV  300
PPPPPPPPQM SATALLQKAA QMGSTASRSP PLISRMFGNG INVSRDNPLG VQLTPVMGAD  360
GGGGGGGSTG KISLFRDEML NSLAPCDSGF DFREGFGGVI RSQREKNGGG GGGGGGGGRN  420
DNLAGLTRDF LGLTNPWSTD ILNPADFAPY MPSSFEHEDK KQW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-101	C2H2 family protein