PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56056.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 1178aa MW: 132856 Da PI: 8.0284

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.3e-07	89	120	60	91
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHelap 91 C+a ++v ++++g+w v+k++l+H H+l+p PKA56056.1 89 ERCRALMEVVRKENGRWLVSKVVLDHAHSLCP 120 57****************************96 PP
2	FAR1	80.1	4.1e-25	407	493	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA ++GFsvrk ks++n + +r +vCs+eg+r ++ + + +++r+etrtgC ak+ +k +++g+++vt++++eHnH++a PKA56056.1 407 EYYVRYAANIGFSVRKGWWDKSTKNI-TRSRVYVCSREGFRPKNAAS--EMKKSRPETRTGCPAKMAIKVTSSGRYRVTEFVSEHNHQFA 493 69*****************96665.9999********9988..9999********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1178 aa Download sequence
MVLISEISNV ASRAKLKEGV GGEEKAPDLE NGAAEPAAEA ADSTLKDGDV PAGKSVYNEC 60 ALRVAQIMRS YFYTRPDSAS SGEPIGGSER CRALMEVVRK ENGRWLVSKV VLDHAHSLCP 120 PSDPAGAVAV GRLVPAVGME FDSISMAKAF YYTYSEKTGF KAKTGSGRRS RGNRILVMQK 180 FLCSKGNYSP SGNSTNESML KRRRGPFSKT TSKYEDEVSC DGPVDFVQVE NSADKPGIGS 240 DEMGLENQSS HAEKGASFDK DCMIKSSASP SQSEWGKNVN MAGLDCQKVA FAGNPAQSRL 300 LRELGIRVSK YSHEERRDII LRYMKKRNNR QVVDRSMKVP SRQALAERRQ RGSGGKFLSK 360 EETQMQAASE QQERNIEEPE VPPELVAKAG GVPIVGMGFE SEDKAYEYYV RYAANIGFSV 420 RKGWWDKSTK NITRSRVYVC SREGFRPKNA ASEMKKSRPE TRTGCPAKMA IKVTSSGRYR 480 VTEFVSEHNH QFAAPVDILL LKSQRLSCSA QHGNHRNADD IPSAYKNYIR AKRLRGMKAG 540 DTGIILEYLQ KMKSCNSSFY YAIQVDEDDK MTNVFWADAK SMIDYHYFGD VVCFDTSYNT 600 NDYGRPLALF IGVNHHRQAV IFGSAFLHDE TVESFKWLFE TFKFAMAGKQ PKTIFTDLGT 660 EIHDAITTVW PGTSQRLCTW HIYQYAIRQL AENFQKSENF QQDFCHCIFD FEEEDEFLAA 720 WSMMLEKYNL KGNEWLVKLY EKKENWAPAY GRNTFSADLQ STLRSECLNS ILKELLNQEA 780 DLSHFFKQYE RLMEEKQYAE LQADYHSNQG TPRIPPLRML WQAANMYTPA VFDIFRKEFE 840 LFMNCVVYSC GEIGRLSEYE VTNKEKPKAQ FVRFDSLDGT VICSCKKFLS FGIQCCHVLK 900 VLDFRNIKEL PQQYILKRWR KDAKMVSLRE NHGLALDGDP NSTPMKRYNC LCRILYRIAE 960 RAADNIDAFT LMVGQTDQLI EQVERLLLTK LLEKPPMNNA LKGQLLNPVE SLVCLDDNSS 1020 ETLKVNGKKR KDRGGCRRLP TGPQMNQRQK LNKGQSEECE VATTDIEPPV ESSDLIAHTR 1080 SSSNQFISPS HFMQGSYVPA HQFGLATVQG LHAMTQFGQD SSASVLQQPF PGSSHLNAPA 1140 VPVYPTPDMH ALQFVGSNPQ LDQGNDQGHC NIPVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 1178 aa Download sequence

MVLISEISNV ASRAKLKEGV GGEEKAPDLE NGAAEPAAEA ADSTLKDGDV PAGKSVYNEC  60
ALRVAQIMRS YFYTRPDSAS SGEPIGGSER CRALMEVVRK ENGRWLVSKV VLDHAHSLCP  120
PSDPAGAVAV GRLVPAVGME FDSISMAKAF YYTYSEKTGF KAKTGSGRRS RGNRILVMQK  180
FLCSKGNYSP SGNSTNESML KRRRGPFSKT TSKYEDEVSC DGPVDFVQVE NSADKPGIGS  240
DEMGLENQSS HAEKGASFDK DCMIKSSASP SQSEWGKNVN MAGLDCQKVA FAGNPAQSRL  300
LRELGIRVSK YSHEERRDII LRYMKKRNNR QVVDRSMKVP SRQALAERRQ RGSGGKFLSK  360
EETQMQAASE QQERNIEEPE VPPELVAKAG GVPIVGMGFE SEDKAYEYYV RYAANIGFSV  420
RKGWWDKSTK NITRSRVYVC SREGFRPKNA ASEMKKSRPE TRTGCPAKMA IKVTSSGRYR  480
VTEFVSEHNH QFAAPVDILL LKSQRLSCSA QHGNHRNADD IPSAYKNYIR AKRLRGMKAG  540
DTGIILEYLQ KMKSCNSSFY YAIQVDEDDK MTNVFWADAK SMIDYHYFGD VVCFDTSYNT  600
NDYGRPLALF IGVNHHRQAV IFGSAFLHDE TVESFKWLFE TFKFAMAGKQ PKTIFTDLGT  660
EIHDAITTVW PGTSQRLCTW HIYQYAIRQL AENFQKSENF QQDFCHCIFD FEEEDEFLAA  720
WSMMLEKYNL KGNEWLVKLY EKKENWAPAY GRNTFSADLQ STLRSECLNS ILKELLNQEA  780
DLSHFFKQYE RLMEEKQYAE LQADYHSNQG TPRIPPLRML WQAANMYTPA VFDIFRKEFE  840
LFMNCVVYSC GEIGRLSEYE VTNKEKPKAQ FVRFDSLDGT VICSCKKFLS FGIQCCHVLK  900
VLDFRNIKEL PQQYILKRWR KDAKMVSLRE NHGLALDGDP NSTPMKRYNC LCRILYRIAE  960
RAADNIDAFT LMVGQTDQLI EQVERLLLTK LLEKPPMNNA LKGQLLNPVE SLVCLDDNSS  1020
ETLKVNGKKR KDRGGCRRLP TGPQMNQRQK LNKGQSEECE VATTDIEPPV ESSDLIAHTR  1080
SSSNQFISPS HFMQGSYVPA HQFGLATVQG LHAMTQFGQD SSASVLQQPF PGSSHLNAPA  1140
VPVYPTPDMH ALQFVGSNPQ LDQGNDQGHC NIPVWDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	327	RRDIILRYMKKR
2	1023	1031	LKVNGKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1 family protein