PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55888.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 483aa MW: 54637.3 Da PI: 9.3938

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	168	208	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE ++l d ++++ + + Ia ++++ Rt +++ksr++ PKA55888.1 168 WTKEETDQLFDMCERFDLR-FIVIADRFPTSRTVEELKSRYY 208 *****************.*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MDAKDILGLP KSFPASQEKK PRPQKEPQRK PDGISREVYA LTGGMAPLMP TIEVSHLKRR 60 QAADKEKVTW QWLPFTNSAR TDNLQLYHWV RVVNGVPPSG DYQFAKYNKV DKMFFPPPMR 120 SIFCLDFCFQ NLKGANVYLL SIVMWMQSVD VLKYTEEEYE KYLTDPMWTK EETDQLFDMC 180 ERFDLRFIVI ADRFPTSRTV EELKSRYYSA SRALVIARAP SAADVAGHPL VKEPYQVAQE 240 IERKRALSAV LSRTKQQELR DNEILSEAKR IMELRMVSKE SENADMPDDQ IDIDVTDKDT 300 PDSASPSSNV QLSSAAAPPA VVTDNASTPA SLRMLRVYLR THVLDQMVQA ASSSAGPRTI 360 KRVEQTLSDL GVHIKPKVPT KAVCAEHLEL RKEILTLFNL QKQLQNKEAE ASARDTLFTE 420 APDTPKRSYR GDMDRSFAPD AAGFGGEKTG KRDHKRKAPG RFIDAPPSPP QSKRPRKFKA 480 SDG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MDAKDILGLP KSFPASQEKK PRPQKEPQRK PDGISREVYA LTGGMAPLMP TIEVSHLKRR  60
QAADKEKVTW QWLPFTNSAR TDNLQLYHWV RVVNGVPPSG DYQFAKYNKV DKMFFPPPMR  120
SIFCLDFCFQ NLKGANVYLL SIVMWMQSVD VLKYTEEEYE KYLTDPMWTK EETDQLFDMC  180
ERFDLRFIVI ADRFPTSRTV EELKSRYYSA SRALVIARAP SAADVAGHPL VKEPYQVAQE  240
IERKRALSAV LSRTKQQELR DNEILSEAKR IMELRMVSKE SENADMPDDQ IDIDVTDKDT  300
PDSASPSSNV QLSSAAAPPA VVTDNASTPA SLRMLRVYLR THVLDQMVQA ASSSAGPRTI  360
KRVEQTLSDL GVHIKPKVPT KAVCAEHLEL RKEILTLFNL QKQLQNKEAE ASARDTLFTE  420
APDTPKRSYR GDMDRSFAPD AAGFGGEKTG KRDHKRKAPG RFIDAPPSPP QSKRPRKFKA  480
SDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	423	428	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-160	MYB_related family protein