PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54785.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 854aa MW: 94487.7 Da PI: 8.6432

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4e-20	763	842	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+ +e++ Li+ r em++r+++ k +++lW+evs+ m+++g++r+p qCk+ w +l ++y++ ++ +k r s++pyf+ + PKA54785.1 763 KWKPEEIKRLIKERGEMNSRFQNVKGRMALWKEVSASMSDHGITRTPAQCKSLWASLVQKYEESRKDDKVR-----SSWPYFTVV 842 7*************************************************************9999975.....57**866 PP

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence
MQGMASLSAF PSLCSCRLSK TPKLRRTFVS CSLAPPALDK GARGSKSPRK RSRRTDGARK 60 SMEDSVQRKL EQFYEGSSGP PLRILPIGGL GEIGMNCMLV GNYDRYILVD AGVMFPDYDE 120 LGVQKITPDT SFIKRWSHKI EAVVITHGHE DHIGALPWVI PALDSLTPLF ASSFTMELIK 180 KRLKESGIFI PSRLKIFNCR TKFLAGPFEV EPIRVTHSIP DCCGLVLRCK DGIIFHTGDW 240 KIDESPLDGK VFDRRALEEL SKEGVTLMMS DSTNVLSPGR TISEAVVAES LLRHISSARG 300 RVITTQFASN IHRIGSVKAA ADLTGRKLVF VGMSLRTYLD AAFRDGKAPM DPSTLVKVEE 360 IDAYAPKDLL IVTTGSQAEP RAALNLASFG GSHSLKLTKE DTILYSAKVI PGNETRVMKM 420 LNRISELGST IVMGRNELLH TSGHGYREEL EEVLKIVKPQ HFLPVHGELL FLKEHELLGQ 480 ATGIKHTAVI KNGEMLGVSH LRNRRVLSSG FASLGKEELQ LMYSDGDKAF GTSTELCIDE 540 RLRIASDGII VVSMEIMRPH PQNINGSSQS SLKGKIRITT RCLWLDKGKL LDALYKAAHA 600 ALSSCPVNCP LVHMERIVSE VLRKVVRKYC SRRPDVIAVA VENTVGVLSE DLRARIAGKN 660 LDGFDLSTIT KESNVHLING LGGCNEDADV SDASRADFDE ELEVGDPLVE QIDAESSLSE 720 LEEQAGTATE HEKSGVNETI YKEEPTKPSE AKIARNKSSK RNKWKPEEIK RLIKERGEMN 780 SRFQNVKGRM ALWKEVSASM SDHGITRTPA QCKSLWASLV QKYEESRKDD KVRSSWPYFT 840 VVDKILSVPQ EAAK

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence

MQGMASLSAF PSLCSCRLSK TPKLRRTFVS CSLAPPALDK GARGSKSPRK RSRRTDGARK  60
SMEDSVQRKL EQFYEGSSGP PLRILPIGGL GEIGMNCMLV GNYDRYILVD AGVMFPDYDE  120
LGVQKITPDT SFIKRWSHKI EAVVITHGHE DHIGALPWVI PALDSLTPLF ASSFTMELIK  180
KRLKESGIFI PSRLKIFNCR TKFLAGPFEV EPIRVTHSIP DCCGLVLRCK DGIIFHTGDW  240
KIDESPLDGK VFDRRALEEL SKEGVTLMMS DSTNVLSPGR TISEAVVAES LLRHISSARG  300
RVITTQFASN IHRIGSVKAA ADLTGRKLVF VGMSLRTYLD AAFRDGKAPM DPSTLVKVEE  360
IDAYAPKDLL IVTTGSQAEP RAALNLASFG GSHSLKLTKE DTILYSAKVI PGNETRVMKM  420
LNRISELGST IVMGRNELLH TSGHGYREEL EEVLKIVKPQ HFLPVHGELL FLKEHELLGQ  480
ATGIKHTAVI KNGEMLGVSH LRNRRVLSSG FASLGKEELQ LMYSDGDKAF GTSTELCIDE  540
RLRIASDGII VVSMEIMRPH PQNINGSSQS SLKGKIRITT RCLWLDKGKL LDALYKAAHA  600
ALSSCPVNCP LVHMERIVSE VLRKVVRKYC SRRPDVIAVA VENTVGVLSE DLRARIAGKN  660
LDGFDLSTIT KESNVHLING LGGCNEDADV SDASRADFDE ELEVGDPLVE QIDAESSLSE  720
LEEQAGTATE HEKSGVNETI YKEEPTKPSE AKIARNKSSK RNKWKPEEIK RLIKERGEMN  780
SRFQNVKGRM ALWKEVSASM SDHGITRTPA QCKSLWASLV QKYEESRKDD KVRSSWPYFT  840
VVDKILSVPQ EAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein