PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54653.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 392aa MW: 44970.7 Da PI: 5.565

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	8e-25	78	159	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lW+++s+kmr++gf rsp++C++kw+nl k++kk k++ k++ ++ +++y+++l+ PKA54653.1 78 WVQEETRSLISFRREMDWFFNTSKSNKHLWAQISAKMRDKGFDRSPNMCTDKWRNLLKEFKKAKHQYKSG---ATVKFSYYKELD 159 ******************************************************************97...344699*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MSLVTLEQLL EEGEDRSNTM YLSDKPRPID FYKEEGREMI IEVVGNGGLP PQQQQLILAE 60 SSGDDPEVKA PKKRAETWVQ EETRSLISFR REMDWFFNTS KSNKHLWAQI SAKMRDKGFD 120 RSPNMCTDKW RNLLKEFKKA KHQYKSGATV KFSYYKELDE LLKERSKNLA SKNHIPSKVD 180 AYLHFPEKGL EDVSVPYNSV EASGRSMLNL EKRLDHDGQP LAITAADPVV AGGIPPWNWR 240 DASANGADSH TSYDGRVILI KYGEYTKKIG IDGSTEAIKE AIKSAFGLRT RRAFWLEDED 300 EVIRSLDRDM PLGTYTLHLD EGVTIKVCLY EDANRMTVRT EDKTLYTEED FRDFLARHNW 360 TVLRELSGFR SVDSLDDIRP GAIYQGVRLL DD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MSLVTLEQLL EEGEDRSNTM YLSDKPRPID FYKEEGREMI IEVVGNGGLP PQQQQLILAE  60
SSGDDPEVKA PKKRAETWVQ EETRSLISFR REMDWFFNTS KSNKHLWAQI SAKMRDKGFD  120
RSPNMCTDKW RNLLKEFKKA KHQYKSGATV KFSYYKELDE LLKERSKNLA SKNHIPSKVD  180
AYLHFPEKGL EDVSVPYNSV EASGRSMLNL EKRLDHDGQP LAITAADPVV AGGIPPWNWR  240
DASANGADSH TSYDGRVILI KYGEYTKKIG IDGSTEAIKE AIKSAFGLRT RRAFWLEDED  300
EVIRSLDRDM PLGTYTLHLD EGVTIKVCLY EDANRMTVRT EDKTLYTEED FRDFLARHNW  360
TVLRELSGFR SVDSLDDIRP GAIYQGVRLL DD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-166	Trihelix family protein