PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA54646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 101aa MW: 11380.1 Da PI: 9.4343 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g+lKKA+ELSvLCda++ +iifs++gklye + PKA54646.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGIIIFSTHGKLYELA 58 8*********************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence |
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIIIFST HGKLYELATN 60 GTMRDLIERY RQSCGETQNV GDSTQPKVST SCFDLFCSSH S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 7e-39 | MIKC_MADS family protein |