PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54608.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 400aa MW: 43877.5 Da PI: 6.6302

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.3e-14	28	71	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ PKA54608.1 28 RGTFSLEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 71 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MDLNSGLQRC GKSCRLRWIN YLRPDLKRGT FSLEEENLII ELHAVLGNRW SQIAAQLPGR 60 TDNEIKNLWN SCIKKKLRQR GIDPNTHKPL AETDQDARES DNTTTTTTTT TTNNNNNSVL 120 NQTLPADPIH NLLPAINKNS MSTCSKEFFI DRFSAGHDSS STACLPSNPM SCCFPLPQSS 180 LSVSPNPLLW LNQSSIATQP FSSTLILSNS IGLKAAAHEN IPSTCLPYLE TGNPSSCSSG 240 NSSSMDMQSS CSLFDSSLPA WPDMGAEKEA AQMNLHGDPD QDLKWSEYLQ GALPVSSVLQ 300 YQGQPSMLYC DAIKAESQFN IHGVGLWQQN LQQHHHHQQN SDIYVGYACN IKSVGDATVF 360 IRSPAAHEMR SLFRLGPIPK PPLLLTPLVS LINGVGCAVL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MDLNSGLQRC GKSCRLRWIN YLRPDLKRGT FSLEEENLII ELHAVLGNRW SQIAAQLPGR  60
TDNEIKNLWN SCIKKKLRQR GIDPNTHKPL AETDQDARES DNTTTTTTTT TTNNNNNSVL  120
NQTLPADPIH NLLPAINKNS MSTCSKEFFI DRFSAGHDSS STACLPSNPM SCCFPLPQSS  180
LSVSPNPLLW LNQSSIATQP FSSTLILSNS IGLKAAAHEN IPSTCLPYLE TGNPSSCSSG  240
NSSSMDMQSS CSLFDSSLPA WPDMGAEKEA AQMNLHGDPD QDLKWSEYLQ GALPVSSVLQ  300
YQGQPSMLYC DAIKAESQFN IHGVGLWQQN LQQHHHHQQN SDIYVGYACN IKSVGDATVF  360
IRSPAAHEMR SLFRLGPIPK PPLLLTPLVS LINGVGCAVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	2e-52	MYB family protein