PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54387.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 419aa MW: 45797.3 Da PI: 9.8676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H PKA54387.1 51 FVCEICGKGFQRDQNLQLHRRGH 73 89*******************88 PP
2	zf-C2H2	12.2	0.00055	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ PKA54387.1 127 WKCDKCSKRYAVQSDWKAHSKVC 149 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MVDGTEAIIL NNSLPPNRPA AKKRRNLPGT PDPKAEVIAL SPKTLMATNR FVCEICGKGF 60 QRDQNLQLHR RGHNLPWKLR QRSGEEPRKR VYVCPEKSCI HHNPSRALGD LTGIKKHFCR 120 KHGEKKWKCD KCSKRYAVQS DWKAHSKVCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE 180 EAARITAASN FNASSMADLI NYPACFTDQS LPPRSSTLAQ MQPLIQAAAG DSSPAEVMAP 240 ALSLWMRGQE TREPLAVPSL SPLEAQLSWI YSSKISSLPI CTVPMKESGS ENLSPQALAS 300 LSSSLGVVAE KRQSPAVNMS ATALLQKAAQ MGVVSSHRPS LLVSFDMRSS SRELFSLNQQ 360 AGLPAVSLGG RVLSPTGQFN LQNYEVGEGR RAGTHGEGIT RDFLGVGIQP LSSSVNGWI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MVDGTEAIIL NNSLPPNRPA AKKRRNLPGT PDPKAEVIAL SPKTLMATNR FVCEICGKGF  60
QRDQNLQLHR RGHNLPWKLR QRSGEEPRKR VYVCPEKSCI HHNPSRALGD LTGIKKHFCR  120
KHGEKKWKCD KCSKRYAVQS DWKAHSKVCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE  180
EAARITAASN FNASSMADLI NYPACFTDQS LPPRSSTLAQ MQPLIQAAAG DSSPAEVMAP  240
ALSLWMRGQE TREPLAVPSL SPLEAQLSWI YSSKISSLPI CTVPMKESGS ENLSPQALAS  300
LSSSLGVVAE KRQSPAVNMS ATALLQKAAQ MGVVSSHRPS LLVSFDMRSS SRELFSLNQQ  360
AGLPAVSLGG RVLSPTGQFN LQNYEVGEGR RAGTHGEGIT RDFLGVGIQP LSSSVNGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-119	C2H2 family protein