PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA54240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 67aa MW: 7992.44 Da PI: 10.6627 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.4 | 3.7e-08 | 9 | 33 | 1 | 25 |
S---SHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAe 25 k+ en+s rqvt+skR ilKKA+ PKA54240.1 9 KKLENTSGRQVTYSKRSLRILKKAK 33 5679********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence |
MGRVKLKIKK LENTSGRQVT YSKRSLRILK KAKDYRHCAT LTFFYSCSHQ QKERPTFCLG 60 ECRFVYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 4e-11 | M-type_MADS family protein |