PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54175.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 744aa    MW: 81299.7 Da    PI: 7.594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.9e-2194149156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r+eL+ +l+L+ rqVk+WFqNrR+++k
  PKA54175.1  94 KKRYHRHTPQQIQELEALFKECPHPDEKQRQELSLRLRLENRQVKFWFQNRRTQMK 149
                 688999***********************************************999 PP
2START155.34.9e-4932947074206
                 TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEE CS
       START  74 etlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghsk 163
                  ++a+ +t++vis+g      galqlm+aelq+lsplvp R++vf+R+++ql +g w++vdvSvd ++++p   s  + ++++lpSg+++++++ng+sk
  PKA54175.1 329 GMIARSTTTDVISTGvggsrnGALQLMQAELQVLSPLVPiREVVFLRFCKQLADGAWAVVDVSVDGNRDNPAadSVLGSKCRRLPSGCVVQDMPNGYSK 427
                 355699*****************************************************************87777778******************** PP

                 EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                 vtwveh++++++ +h+++r+l++sg+a ga++wvatl+r+ce+
  PKA54175.1 428 VTWVEHAEYNDAAVHQIFRPLLRSGMALGAQRWVATLHRHCEC 470
                 *****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    
MSFGGHFDDD YGSSGVPITA APSPIFGSAS LSLGLSNVEG HGELNRLTAA GGCSGGELDG  60
IWRNKEEEDE SRSGSDNFEA GSGDDLDLEN PRKKKRYHRH TPQQIQELEA LFKECPHPDE  120
KQRQELSLRL RLENRQVKFW FQNRRTQMKT QLERHENTIL RQEHEKLRAE NITIRDLMRN  180
PICGSCGGPA VLGEVPLEEQ QLRIENARLK DELDRVCAIA GKFLGRPISS LPLPISYPLP  240
NSSLDLAVGG NGAAFGAFSS VATAFPAVSD LGTSPLGTVI TPSRSTLAMD RSLESSMFLE  300
LALTAMDELV KLSQTGEPIW ARWADLFPGM IARSTTTDVI STGVGGSRNG ALQLMQAELQ  360
VLSPLVPIRE VVFLRFCKQL ADGAWAVVDV SVDGNRDNPA ADSVLGSKCR RLPSGCVVQD  420
MPNGYSKVTW VEHAEYNDAA VHQIFRPLLR SGMALGAQRW VATLHRHCEC LAILMSSSVP  480
NRGLSAITAA GRRSMLRLAH RMTENFCAGV CASAEGKWTR LANMARSVGE DVRVMTRQSA  540
EDPGEPPGVV LSAATSVWLP ASPHRLFEFL HDESQRSQWD ILSNGGPMLE MAHIAKGQNH  600
GNAVSLLRCE LEPKRHPDTA RDVHRRLGLD GGVRAGGCAG DAARHERRRL RLRGAAAVGL  660
RRHAGWVGSG GRGEGRAGLA ADGGVPDSGQ QPADGEADHG VGGDGEQSDI LHRAEDQGGS  720
PVRELIRERR RWRWRWRWRW RRGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727737RERRRWRWRWR
2729739RERRRWRWRWR
3731741RERRRWRWRWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein