PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54105.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family AP2
Protein Properties Length: 419aa    MW: 45868.5 Da    PI: 10.0302
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17122171155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  PKA54105.1 122 SQFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 171
                 789******************......55*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MWNLNDMPNR EEGVPATPVA EQDSSVVIVE VCGGEPEIVD LSVSGGGSRE ECSSADSEAV  60
PARRFLPAYE LPENARRLQN HHFGLQSPEI AARAAAASQA PKAMEFRQPI KKGRRGPRSK  120
SSQFRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDRAAIKFR GADADINFSL  180
KDYEEDVKLT GNFSKEEFVH VLRRQSTGFP RGSSKFRGVT LHKCGRWEAR LGQSMGRKAY  240
DIASIKCNGK DAVTNFDPSI YQKELNPKDE GAGCNLELSL GRSLSSRKME VSKQALIDTN  300
SSWTRNFRPK ICEKLKLLEE ENRRASYLVS SSSFQMNSSP AQSASRQQQR AFAVLPGASN  360
RQPMAPRLPY YGAASGIYRH PAAAAAAAAG STHFFAATTA VAAAAASSGF PNRVVANTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.12e-76AP2 family protein