PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53805.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26740.3 Da    PI: 9.764
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-31958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+lyey+
  PKA53805.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLYEYA 58
                79***********************************************8 PP
2K-box96.83.4e-3281172899
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 s +ea++ +++qe++kL ++i nLq+++R+l+G+ +++++++eL+qLe++Le s++kiRskKnell+++ie+lqk+  el+++ ++Lr+k++
  PKA53805.1  81 SFSEANSLYYKQEASKLHQQITNLQNSNRNLMGDAVSNMNIRELRQLEKRLEASINKIRSKKNELLYAEIEYLQKRDVELNNDYMYLRNKIA 172
                 3789999***********************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLYEYANN  60
SVKGTIERYK KASTDISNTG SFSEANSLYY KQEASKLHQQ ITNLQNSNRN LMGDAVSNMN  120
IRELRQLEKR LEASINKIRS KKNELLYAEI EYLQKRDVEL NNDYMYLRNK IADNERAQQH  180
QHMNILPSSS TEYEVMPTFD SRNSLQVHVM DPNSHHSRQQ LTALQLGYII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein