PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 113aa MW: 12966.1 Da PI: 10.0662 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.3 | 1.7e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+ rqvtfskRr+g+lKKA+ELS+LCdaev +i+fs g+lye++s PKA53724.1 10 RIDNSASRQVTFSKRRTGLLKKAKELSILCDAEVGLIVFSGAGRLYEFAS 59 8***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence |
MGRGKIAIRR IDNSASRQVT FSKRRTGLLK KAKELSILCD AEVGLIVFSG AGRLYEFASS 60 RFVILPRSHS PTSPSLSLSL SLSLSLSIYI YIYIYTYNIY FYSIYTYYIY IYN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-31 | MIKC_MADS family protein |