PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 235aa MW: 25788.6 Da PI: 7.8147 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 149.1 | 4.3e-46 | 2 | 217 | 160 | 373 |
GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.....s 252 etg+rLa+fA+++g+pf+f ++ e +++ + ++ +gE+++ n+vl+ +l ++s+++ ++L l +++v+vve+e+ ++e + PKA53492.1 2 ETGRRLASFAASVGLPFSFGQCRLDAGELFRPVAVKIVKGEVVVLNCVLHASHLGNRSAASVA---SFLGSAAALGARLVTVVEEESAGaGEEeegegE 97 79*******************9999******************************88888777...9*******************654233345555* PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 F++ f+e l ysa+ d+lea++p++ ++r vEr +lg+ i+ +v + ++ re + + W+e+l+e+GF+ v ls ++ +qa+lll ++ +gy+v PKA53492.1 98 FVRLFMEELLRYSAMWDALEAGFPKQRKAREAVERLILGPMITRAVGRAYRR-REHEGLWNGWSEWLSEVGFRRVGLSFFNLCQARLLLGLFN-NGYHV 194 ***********************************************99985.777777899*******************************.9**** PP GRAS 352 eee.sgslvlgWkdrpLvsvSaW 373 +e+ ++ lvl+Wk+ +L+s+S+W PKA53492.1 195 DEDsRNKLVLCWKSCRLLSASSW 217 *87478999************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
METGRRLASF AASVGLPFSF GQCRLDAGEL FRPVAVKIVK GEVVVLNCVL HASHLGNRSA 60 ASVASFLGSA AALGARLVTV VEEESAGAGE EEEGEGEFVR LFMEELLRYS AMWDALEAGF 120 PKQRKAREAV ERLILGPMIT RAVGRAYRRR EHEGLWNGWS EWLSEVGFRR VGLSFFNLCQ 180 ARLLLGLFNN GYHVDEDSRN KLVLCWKSCR LLSASSWASP PPAISPLPAA SCFNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-32 | GRAS family protein |