PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52793.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 437aa MW: 48604.6 Da PI: 7.7905

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	28	73	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +W+++Ed+ll + v+ +G+ +W+ Ia+ ++ g+t+ qc+ rw++yl PKA52793.1 28 SWSQQEDDLLREQVAIHGSSdNWTIIAAQFN-GKTGRQCRRRWFTYL 73 7***************99*******.***********97 PP
2	Myb_DNA-binding	44.1	4.9e-14	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+++ gR+++ +k+r+ + PKA52793.1 79 KGGWSPEEDVLLCEAQKIFGNR-WTEIAKMVS-GRSDNAVKNRFST 122 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MQAPVAEMST GSRTTAAPLV KKGAHMVSWS QQEDDLLREQ VAIHGSSDNW TIIAAQFNGK 60 TGRQCRRRWF TYLNADCKKG GWSPEEDVLL CEAQKIFGNR WTEIAKMVSG RSDNAVKNRF 120 STLCKKRAKD EASCKENNGL LVSTDSKRAL MKTSATKHVS YDGSANPKFS SYSLAANCGI 180 TRGQSRPPLA LLTQKLNSSS ILQETCHIGS RTNARSCDTI MISEDQGTFL RKDDPKLTAL 240 LQQEEMLSSL AVRVNSENTK ESLENAWKEL EDYETKFKEL IKDNTKVNSE GQLSLRKDYA 300 IEDSQANCGA CTGSKHQFED CSLNCEEGFS DKHKSILISD EVIDPFTTDK QYNGIEVKLA 360 ASELNSPLKT IHPFHSFTDE IPTPEFSTSE KKFLLSVLGK SSPCTFPNSS QQSYHKIYSF 420 PSSNHSPSCK RALLNSL

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MQAPVAEMST GSRTTAAPLV KKGAHMVSWS QQEDDLLREQ VAIHGSSDNW TIIAAQFNGK  60
TGRQCRRRWF TYLNADCKKG GWSPEEDVLL CEAQKIFGNR WTEIAKMVSG RSDNAVKNRF  120
STLCKKRAKD EASCKENNGL LVSTDSKRAL MKTSATKHVS YDGSANPKFS SYSLAANCGI  180
TRGQSRPPLA LLTQKLNSSS ILQETCHIGS RTNARSCDTI MISEDQGTFL RKDDPKLTAL  240
LQQEEMLSSL AVRVNSENTK ESLENAWKEL EDYETKFKEL IKDNTKVNSE GQLSLRKDYA  300
IEDSQANCGA CTGSKHQFED CSLNCEEGFS DKHKSILISD EVIDPFTTDK QYNGIEVKLA  360
ASELNSPLKT IHPFHSFTDE IPTPEFSTSE KKFLLSVLGK SSPCTFPNSS QQSYHKIYSF  420
PSSNHSPSCK RALLNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	3e-97	MYB family protein