PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52621.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 447aa MW: 49059.4 Da PI: 8.4579

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	213	234	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg++F+ + L+ H + H PKA52621.1 213 CHKCGEHFRKMEALEAHRLSkH 234 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDSADVLLKQ RTRREEKVAE QRMPAILWVS LKRSLRYCTS EQSEVHEPRA RGSLDSILTW 60 KPFRSGCSRS ISNLRDVVIH GSKRHLEMPP SCSPMSIGSS ELLNPIAHGV ILSNSKCELR 120 IASFSGYRGG EAGMSSTFVS APRPGTPCPG LFEGPPHNSF LRRSSSALCC EGEKQRSRGS 180 NLSFSVLGIN EGEDASLDIP RASLESAIAS AACHKCGEHF RKMEALEAHR LSKHSVTELV 240 EGDSSRKIVE IICRTSTVKS SQGFSVLRIE RILKVHNMQE TLARFEDYRD TVKLKASMIQ 300 KKHPRCLADG NELLRFHGTT MACNLGVNGS NGLCVSENCS VCRVIRHGFS IDKDLKEGTG 360 VFTASTGRTA FESIVIDGCV PSMKKALLVC RAIAGRVHKP LENLQELACL SGFDSLAGKF 420 DLYSNMEELY LLNPLALLPC FVVVCNP

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDSADVLLKQ RTRREEKVAE QRMPAILWVS LKRSLRYCTS EQSEVHEPRA RGSLDSILTW  60
KPFRSGCSRS ISNLRDVVIH GSKRHLEMPP SCSPMSIGSS ELLNPIAHGV ILSNSKCELR  120
IASFSGYRGG EAGMSSTFVS APRPGTPCPG LFEGPPHNSF LRRSSSALCC EGEKQRSRGS  180
NLSFSVLGIN EGEDASLDIP RASLESAIAS AACHKCGEHF RKMEALEAHR LSKHSVTELV  240
EGDSSRKIVE IICRTSTVKS SQGFSVLRIE RILKVHNMQE TLARFEDYRD TVKLKASMIQ  300
KKHPRCLADG NELLRFHGTT MACNLGVNGS NGLCVSENCS VCRVIRHGFS IDKDLKEGTG  360
VFTASTGRTA FESIVIDGCV PSMKKALLVC RAIAGRVHKP LENLQELACL SGFDSLAGKF  420
DLYSNMEELY LLNPLALLPC FVVVCNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-139	C2H2 family protein